Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1812 ATGGTTTGCGAGATGGAGACTGATGTTATTGAAGATATGGACATTGAAGCCCTTACTTCTATGTGGCCTGAGGATGTCGGACCAGATGTTCGAAAACAATTCAATGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGAAAGAAGTTAACATTATAGAGGAACCTACAATTGTTGATTTCAAGAGACTTATCGAGTTAACTAACTATACCGAGAAAGGATCTTCACAATTACAGTATCTTGCAAAACAATGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTCAAAGAAGAACTCGACATTCTAAGCAAGCAGAGAAAAGAAGTTGAGTTCAAGAAATTGAAGATATTAGAGGAACATCGTTTTGAGGAAGAAAGATATGTGGGCGATAAACGTCCGATTTCTATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGGAGGAAAACTGATTTTGTTGTTCAAAGTAAGAGAGTTGAAATTGATGCAGAGTATGATACAGTCACATATTGGAAACAGCGAGCCATGGATCTGGAAATATTATTGGGAGCAAGTCTGCAGCGAGAGCAAATACTTGCAGAGAAGCTTCGGGAAAACATAAAAAATATCGAGAAGCAGTCGTCACCGGTTGAGGAGTTGTCAGAGATTCTGAAGAGAGCCGACAATTTTTTGCATTTTGTTTTGCAGAATGCACCAGTTGTTTTTGGTCACCAGGACAAAGAGTTGCGCTACCGTTTTATCTACAATCATTTTCCTAGTTTGGATGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTTAGTGGTGCTGGCGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTATGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTCGATACAGAATTATTTGGACTGAAGACCTTTTTGATTTATGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATAGCAGTACAAAAAGCCAAGGAATCAGAACTGAACAAAACAATTCATATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCACGAAATTCGATCTCCGTTATCTGGAGTGGTTAGTATGGCTGAGATCTTGTCCACCACGAAACTTGATCGGGAACAACGACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGCTGGAAGCTACGAAATTCCGTCCAAGAGAGGTTGTAAAACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGTGGCAGATAGCAGATGATGTTCCTATAGAGGTCATCGGAGACGTTCTTAGGATTCGGCAAATTCTCACTAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCACTGGAAAAGGAGAAGAATGCCTTAAGAAATCAACAGCTGATAACTCAACAGTTCCAGTAAATGGTTTGCAAGAAGGAACATGTCTTCCAGCCCCTCAGAATGGCCAAAAACATGTCGACAGAAATCATTTGCAATGTGATGGACCAGGAACCCCAAACAAGAGTGAAACCACAATGAATGGAAATAGAGAAAGAAAATCTTGTTCGCCTGAAACGACGGTATGGATACGCTGTGATGTATACGACACGGGGATTGGAATACCTGAAAATGCATTACCGAGCCTTTTTAAGAGGTACATGCAAGCTAGTGCCGATCATGCTCGAAAGTATGGAGGAACTGGGCTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTACCAGCCGAGAGAACCATGGATCTACGTTTACATTTGTATTGCCCTACAAGGTTTCAACCACCTGCAGTCCTTCCGACGACTCAGACGAGCTCTCAGACGACGAGTCGACAAATGACGAAATGACTGAGGGCTTTTTCCAATTCCAAACCCACAGTTTCAGTTCACTATCATCTTCTAATGGATCCTCAAGGATCTCTAACTCACTTATGCATACAACCAAACTCAATGGATTTGCTGAAGGTTCTTATCCTATTCCCTCAAACAACATCACACCACAAGAGACTGCTACTCTTAGAGATGCCCGTTCCGCCAATGCGACATTAACCTCGAGCGAGTCACAATGTTCATCACGTCAGACCAACTCAAATCTGGATGACAAAGGAAACCAAAATCAACCCGACACAAATGCTCGGTTTCAAACTGTCGGTGTGAATTCCCTTGATGAGCAAAAAGATACACTGGAGAAGCCAAGTAGTAAACTTCAAAAAATTGATCAGGGGAAAGGGAGATCTTCAGATGCAAGTTCCCTGTTCAGCAGAACTAGCAGTAGTGGTTCTGAATTAACAATGGGATTGGAACCTAGAATTCTTCTTGTTGAGGATAACAAGACCAACATTATGGTGACTCAGTCCATGATGAAGAAATTTGGCCAAAAAATCGACGTGGTAACTAATGGGATTGAAGCTGTTCGTGCAATTCAAAGACGCTCTTACGATCTCATTCTCATGGATATATACATGCCAGTAATGGATGGGCTTGAAGCTACAAGGTTAATTCGTAGTTTTGAGGAAACAGGCAGCTGGGAGGCTGCTGTAAGTGCTGGAATTCAACCAACTACTCCTTGTTTGACTCATTCCTCTACCAGTAAGAGAATGCCAATTATTGCTATGACGGCGAATACATTGTCAGAAACCGCCGATGAGTGTTATGGAAACGGCATGGACTCGTTCGTATCAAAGCCAATCACCTTCCAAAAGTTGAAACAATGTCTTGATCAATTTTTACCACAACGCCCCTTGTAA 2976 41.53 MVCEMETDVIEDMDIEALTSMWPEDVGPDVRKQFNVERPGADQDMLKEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVEFKKLKILEEHRFEEERYVGDKRPISILEESCDLWQDIPRRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEILLGASLQREQILAEKLRENIKNIEKQSSPVEELSEILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLDEEDIIGRTDVEIFSGAGVKESQDFKKEVMEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEWQIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPTGKGEECLKKSTADNSTVPVNGLQEGTCLPAPQNGQKHVDRNHLQCDGPGTPNKSETTMNGNRERKSCSPETTVWIRCDVYDTGIGIPENALPSLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFVLPYKVSTTCSPSDDSDELSDDESTNDEMTEGFFQFQTHSFSSLSSSNGSSRISNSLMHTTKLNGFAEGSYPIPSNNITPQETATLRDARSANATLTSSESQCSSRQTNSNLDDKGNQNQPDTNARFQTVGVNSLDEQKDTLEKPSSKLQKIDQGKGRSSDASSLFSRTSSSGSELTMGLEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAIQRRSYDLILMDIYMPVMDGLEATRLIRSFEETGSWEAAVSAGIQPTTPCLTHSSTSKRMPIIAMTANTLSETADECYGNGMDSFVSKPITFQKLKQCLDQFLPQRPL 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31715207 31724658 + Sed0022125.1 Sed05g1812 714438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1812 991 CDD REC_hyHK_CKI1_RcsC-like 847 982 - -
Sed05g1812 991 MobiDBLite consensus disorder prediction 564 584 - -
Sed05g1812 991 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g1812 991 CDD HATPase_EvgS-ArcB-TorS-like 487 666 - -
Sed05g1812 991 Gene3D PAS domain 212 348 - -
Sed05g1812 991 MobiDBLite consensus disorder prediction 799 838 - -
Sed05g1812 991 Gene3D - 843 986 - -
Sed05g1812 991 Coils Coil 92 112 - -
Sed05g1812 991 MobiDBLite consensus disorder prediction 800 818 - -
Sed05g1812 991 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 667 IPR036890 -
Sed05g1812 991 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g1812 991 Coils Coil 188 208 - -
Sed05g1812 991 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 47 989 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Sed05g1812 991 FunFam Histidine kinase 5 213 348 - -
Sed05g1812 991 PRINTS Bacterial sensor protein C-terminal signature 594 608 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g1812 991 PRINTS Bacterial sensor protein C-terminal signature 629 647 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g1812 991 PRINTS Bacterial sensor protein C-terminal signature 612 622 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g1812 991 PRINTS Bacterial sensor protein C-terminal signature 653 666 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g1812 991 SMART HKATPase_4 482 669 IPR003594 -
Sed05g1812 991 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g1812 991 Gene3D - 367 435 - -
Sed05g1812 991 MobiDBLite consensus disorder prediction 751 787 - -
Sed05g1812 991 MobiDBLite consensus disorder prediction 819 838 - -
Sed05g1812 991 Gene3D - 436 673 IPR036890 -
Sed05g1812 991 MobiDBLite consensus disorder prediction 566 584 - -
Sed05g1812 991 ProSiteProfiles Histidine kinase domain profile. 378 669 IPR005467 -
Sed05g1812 991 SMART REC_2 845 982 IPR001789 GO:0000160(InterPro)
Sed05g1812 991 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 592 667 IPR003594 -
Sed05g1812 991 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g1812 991 FunFam Histidine kinase 5 840 987 - -
Sed05g1812 991 Coils Coil 342 362 - -
Sed05g1812 991 ProSiteProfiles Response regulatory domain profile. 846 986 IPR001789 GO:0000160(InterPro)
Sed05g1812 991 FunFam Putative histidine kinase 5 359 436 - -
Sed05g1812 991 SUPERFAMILY CheY-like 845 988 IPR011006 -
Sed05g1812 991 Pfam Response regulator receiver domain 847 914 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1812 Sed-Chr5:31715207 Sed13g1937 Sed-Chr13:24280361 0.00E+00 dispersed
Sed05g1812 Sed-Chr5:31715207 Sed05g0964 Sed-Chr5:7944764 2.20E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38553 PF02518 HATPase_c 5.50E-28 CL0025 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1812 - - - 0.0