Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1812 ATGGTTTGCGAGATGGAGACTGATGTTATTGAAGATATGGACATTGAAGCCCTTACTTCTATGTGGCCTGAGGATGTCGGACCAGATGTTCGAAAACAATTCAATGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGAAAGAAGTTAACATTATAGAGGAACCTACAATTGTTGATTTCAAGAGACTTATCGAGTTAACTAACTATACCGAGAAAGGATCTTCACAATTACAGTATCTTGCAAAACAATGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTCAAAGAAGAACTCGACATTCTAAGCAAGCAGAGAAAAGAAGTTGAGTTCAAGAAATTGAAGATATTAGAGGAACATCGTTTTGAGGAAGAAAGATATGTGGGCGATAAACGTCCGATTTCTATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGGAGGAAAACTGATTTTGTTGTTCAAAGTAAGAGAGTTGAAATTGATGCAGAGTATGATACAGTCACATATTGGAAACAGCGAGCCATGGATCTGGAAATATTATTGGGAGCAAGTCTGCAGCGAGAGCAAATACTTGCAGAGAAGCTTCGGGAAAACATAAAAAATATCGAGAAGCAGTCGTCACCGGTTGAGGAGTTGTCAGAGATTCTGAAGAGAGCCGACAATTTTTTGCATTTTGTTTTGCAGAATGCACCAGTTGTTTTTGGTCACCAGGACAAAGAGTTGCGCTACCGTTTTATCTACAATCATTTTCCTAGTTTGGATGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTTAGTGGTGCTGGCGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTATGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTCGATACAGAATTATTTGGACTGAAGACCTTTTTGATTTATGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATAGCAGTACAAAAAGCCAAGGAATCAGAACTGAACAAAACAATTCATATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCACGAAATTCGATCTCCGTTATCTGGAGTGGTTAGTATGGCTGAGATCTTGTCCACCACGAAACTTGATCGGGAACAACGACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGCTGGAAGCTACGAAATTCCGTCCAAGAGAGGTTGTAAAACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGTGGCAGATAGCAGATGATGTTCCTATAGAGGTCATCGGAGACGTTCTTAGGATTCGGCAAATTCTCACTAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCACTGGAAAAGGAGAAGAATGCCTTAAGAAATCAACAGCTGATAACTCAACAGTTCCAGTAAATGGTTTGCAAGAAGGAACATGTCTTCCAGCCCCTCAGAATGGCCAAAAACATGTCGACAGAAATCATTTGCAATGTGATGGACCAGGAACCCCAAACAAGAGTGAAACCACAATGAATGGAAATAGAGAAAGAAAATCTTGTTCGCCTGAAACGACGGTATGGATACGCTGTGATGTATACGACACGGGGATTGGAATACCTGAAAATGCATTACCGAGCCTTTTTAAGAGGTACATGCAAGCTAGTGCCGATCATGCTCGAAAGTATGGAGGAACTGGGCTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTACCAGCCGAGAGAACCATGGATCTACGTTTACATTTGTATTGCCCTACAAGGTTTCAACCACCTGCAGTCCTTCCGACGACTCAGACGAGCTCTCAGACGACGAGTCGACAAATGACGAAATGACTGAGGGCTTTTTCCAATTCCAAACCCACAGTTTCAGTTCACTATCATCTTCTAATGGATCCTCAAGGATCTCTAACTCACTTATGCATACAACCAAACTCAATGGATTTGCTGAAGGTTCTTATCCTATTCCCTCAAACAACATCACACCACAAGAGACTGCTACTCTTAGAGATGCCCGTTCCGCCAATGCGACATTAACCTCGAGCGAGTCACAATGTTCATCACGTCAGACCAACTCAAATCTGGATGACAAAGGAAACCAAAATCAACCCGACACAAATGCTCGGTTTCAAACTGTCGGTGTGAATTCCCTTGATGAGCAAAAAGATACACTGGAGAAGCCAAGTAGTAAACTTCAAAAAATTGATCAGGGGAAAGGGAGATCTTCAGATGCAAGTTCCCTGTTCAGCAGAACTAGCAGTAGTGGTTCTGAATTAACAATGGGATTGGAACCTAGAATTCTTCTTGTTGAGGATAACAAGACCAACATTATGGTGACTCAGTCCATGATGAAGAAATTTGGCCAAAAAATCGACGTGGTAACTAATGGGATTGAAGCTGTTCGTGCAATTCAAAGACGCTCTTACGATCTCATTCTCATGGATATATACATGCCAGTAATGGATGGGCTTGAAGCTACAAGGTTAATTCGTAGTTTTGAGGAAACAGGCAGCTGGGAGGCTGCTGTAAGTGCTGGAATTCAACCAACTACTCCTTGTTTGACTCATTCCTCTACCAGTAAGAGAATGCCAATTATTGCTATGACGGCGAATACATTGTCAGAAACCGCCGATGAGTGTTATGGAAACGGCATGGACTCGTTCGTATCAAAGCCAATCACCTTCCAAAAGTTGAAACAATGTCTTGATCAATTTTTACCACAACGCCCCTTGTAA 2976 41.53 MVCEMETDVIEDMDIEALTSMWPEDVGPDVRKQFNVERPGADQDMLKEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVEFKKLKILEEHRFEEERYVGDKRPISILEESCDLWQDIPRRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEILLGASLQREQILAEKLRENIKNIEKQSSPVEELSEILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLDEEDIIGRTDVEIFSGAGVKESQDFKKEVMEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEWQIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPTGKGEECLKKSTADNSTVPVNGLQEGTCLPAPQNGQKHVDRNHLQCDGPGTPNKSETTMNGNRERKSCSPETTVWIRCDVYDTGIGIPENALPSLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFVLPYKVSTTCSPSDDSDELSDDESTNDEMTEGFFQFQTHSFSSLSSSNGSSRISNSLMHTTKLNGFAEGSYPIPSNNITPQETATLRDARSANATLTSSESQCSSRQTNSNLDDKGNQNQPDTNARFQTVGVNSLDEQKDTLEKPSSKLQKIDQGKGRSSDASSLFSRTSSSGSELTMGLEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAIQRRSYDLILMDIYMPVMDGLEATRLIRSFEETGSWEAAVSAGIQPTTPCLTHSSTSKRMPIIAMTANTLSETADECYGNGMDSFVSKPITFQKLKQCLDQFLPQRPL 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31715207 31724658 + Sed0022125.1 Sed05g1812 714438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1812 991 CDD REC_hyHK_CKI1_RcsC-like 847 982 - -
Sed05g1812 991 MobiDBLite consensus disorder prediction 564 584 - -
Sed05g1812 991 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g1812 991 CDD HATPase_EvgS-ArcB-TorS-like 487 666 - -
Sed05g1812 991 Gene3D PAS domain 212 348 - -
Sed05g1812 991 MobiDBLite consensus disorder prediction 799 838 - -
Sed05g1812 991 Gene3D - 843 986 - -
Sed05g1812 991 Coils Coil 92 112 - -
Sed05g1812 991 MobiDBLite consensus disorder prediction 800 818 - -
Sed05g1812 991 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 667 IPR036890 -
Sed05g1812 991 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g1812 991 Coils Coil 188 208 - -
Sed05g1812 991 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 47 989 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Sed05g1812 991 FunFam Histidine kinase 5 213 348 - -
Sed05g1812 991 PRINTS Bacterial sensor protein C-terminal signature 594 608 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g1812 991 PRINTS Bacterial sensor protein C-terminal signature 629 647 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g1812 991 PRINTS Bacterial sensor protein C-terminal signature 612 622 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g1812 991 PRINTS Bacterial sensor protein C-terminal signature 653 666 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g1812 991 SMART HKATPase_4 482 669 IPR003594 -
Sed05g1812 991 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g1812 991 Gene3D - 367 435 - -
Sed05g1812 991 MobiDBLite consensus disorder prediction 751 787 - -
Sed05g1812 991 MobiDBLite consensus disorder prediction 819 838 - -
Sed05g1812 991 Gene3D - 436 673 IPR036890 -
Sed05g1812 991 MobiDBLite consensus disorder prediction 566 584 - -
Sed05g1812 991 ProSiteProfiles Histidine kinase domain profile. 378 669 IPR005467 -
Sed05g1812 991 SMART REC_2 845 982 IPR001789 GO:0000160(InterPro)
Sed05g1812 991 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 592 667 IPR003594 -
Sed05g1812 991 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g1812 991 FunFam Histidine kinase 5 840 987 - -
Sed05g1812 991 Coils Coil 342 362 - -
Sed05g1812 991 ProSiteProfiles Response regulatory domain profile. 846 986 IPR001789 GO:0000160(InterPro)
Sed05g1812 991 FunFam Putative histidine kinase 5 359 436 - -
Sed05g1812 991 SUPERFAMILY CheY-like 845 988 IPR011006 -
Sed05g1812 991 Pfam Response regulator receiver domain 847 914 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1812 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1812 Sed-Chr5:31715207 Sed13g1937 Sed-Chr13:24280361 0.00E+00 dispersed
Sed05g1812 Sed-Chr5:31715207 Sed05g0964 Sed-Chr5:7944764 2.20E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0961 . 16 1220 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1455.7
Sed04g0960 . 5 1194 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1454.9
Sed03g1085 . 23 986 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1320.4
Sed06g0270 . 36 1011 Histidine Kinase Gene Family AT2G01830 70.3 0.0e+00 1312.4
Sed06g0268 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed06g0269 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed07g0081 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed07g0082 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed05g2083 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed05g2084 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed09g0384 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed09g0383 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed05g0964 . 302 1249 Histidine Kinase Gene Family AT2G01830 51.5 2.7e-265 912.9
Sed01g0554 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0555 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0556 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0557 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed13g1937 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed13g1938 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed05g1812 . 1 986 Histidine Kinase Gene Family AT5G10720 57.1 1.7e-287 986.5
Sed13g1939 . 1 899 Histidine Kinase Gene Family AT5G10720 57.7 4.7e-258 888.6
Sed11g0823 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0824 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0858 . 15 1114 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1598.6
Sed05g2127 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed05g2128 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed02g1136 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1194.9
Sed12g0771 . 31 1124 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1178.7
Sed12g0772 . 31 1035 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1125.9
Sed12g0772 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1640.2
Sed12g0771 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1639.0
Sed02g1136 . 13 1061 Histidine Kinase Gene Family AT2G18790 77.4 0.0e+00 1634.0
Sed01g2201 . 7 1049 Histidine Kinase Gene Family AT2G18790 58.9 0.0e+00 1227.6
Sed01g2202 . 7 951 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1142.9
Sed11g0823 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed11g0824 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed05g2127 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed05g2128 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed11g0858 . 19 1047 Histidine Kinase Gene Family AT2G18790 51.4 1.4e-307 1053.5
Sed05g2127 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed05g2128 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed12g0771 . 31 1126 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1139.8
Sed02g1136 . 27 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1132.1
Sed11g0823 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed11g0824 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed12g0772 . 31 1038 Histidine Kinase Gene Family AT5G35840 53.4 0.0e+00 1092.8
Sed02g1136 . 3 1122 Histidine Kinase Gene Family AT4G16250 74.9 0.0e+00 1691.4
Sed12g0771 . 34 1126 Histidine Kinase Gene Family AT4G16250 75.5 0.0e+00 1681.8
Sed12g0772 . 34 1063 Histidine Kinase Gene Family AT4G16250 75.6 0.0e+00 1584.3
Sed01g2201 . 30 1110 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1267.7
Sed01g2202 . 30 951 Histidine Kinase Gene Family AT4G16250 59.8 0.0e+00 1129.0
Sed11g0823 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed11g0824 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed05g2127 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed05g2128 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed11g0858 . 13 1112 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1090.5
Sed01g2201 . 13 1124 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1355.5
Sed02g1136 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1274.6
Sed12g0771 . 43 1124 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1261.1
Sed01g2202 . 13 951 Histidine Kinase Gene Family AT4G18130 64.3 0.0e+00 1198.3
Sed12g0772 . 43 1065 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38553 PF02518 HATPase_c 5.50E-28 CL0025 Sed TR