Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1813 ATGGGCTATCTGAATTCAGTTTTGTCTTGCTCCACCCACATTCATGCGGATGATGCTCCTGTTAGCGGCGGAGGATTAAGTCAGAATGGGAAGTTTAGCTACGGATATGCTAGCTCTCCGGGGAAGAGATCTTCGATGGAAGATTTTTACGAGACACGAATCGATGGCGTGGATGGAGAAATTGTTGGTCTATTTGGTGTTTTTGATGGCCATGGTGGAGCACGAGCCGCGGAGTATGTTAAGCACAATCTTTTTAGTAACTTGATCAGTCATCCGAAGTTCATATCGGATACCAAATCCGCTATATCTGATGCATATAACCACACAGACTCAGAATTTTTGAAGTCAGAAAATAATCAAAACAGAGATGCTGGATCTACTGCTTCCACTGCCATTCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGAGACTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCCGACCAAACTGATGAGCGACGGCGAATTGAGGATGCAGGGGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGCGATAGGCTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAAGAAAAGATCGATAGCTCGCTCGAGTTTCTCATACTCGCAAGTGATGGACTATGGGATGTCGTCACTAATGAGGAAGCTGTTGCTATGACTAAACCAATTCAGGATGCAGAAGAGGCGGCAAAGAGATTGATGCAAGAAGCATATCAAAGAGGCAGTGCAGATAACATTACTTGCGTCGTCGTCCGTTTCTTGGCGAATCAAGGAAGTCCCTCTCCGTGA 867 46.14 MGYLNSVLSCSTHIHADDAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAISDAYNHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVAMTKPIQDAEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSP 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31743957 31748969 - Sed0024478.1 Sed05g1813 714439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1813 288 SUPERFAMILY PP2C-like 27 279 IPR036457 -
Sed05g1813 288 SMART PP2C_SIG_2 44 279 IPR001932 -
Sed05g1813 288 Gene3D - 25 283 IPR036457 -
Sed05g1813 288 PANTHER PROTEIN PHOSPHATASE 33 278 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g1813 288 SMART PP2C_4 23 277 IPR001932 -
Sed05g1813 288 ProSitePatterns PPM-type phosphatase domain signature. 64 72 IPR000222 GO:0043169(InterPro)
Sed05g1813 288 Pfam Protein phosphatase 2C 62 272 IPR001932 -
Sed05g1813 288 CDD PP2Cc 32 279 IPR001932 -
Sed05g1813 288 FunFam probable protein phosphatase 2C 59 25 283 - -
Sed05g1813 288 ProSiteProfiles PPM-type phosphatase domain profile. 33 279 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0951 Sed-Chr1:7056172 Sed05g1813 Sed-Chr5:31743957 4.20E-101 dispersed
Sed01g0952 Sed-Chr1:7056172 Sed05g1813 Sed-Chr5:31743957 5.20E-99 dispersed
Sed01g0953 Sed-Chr1:7056172 Sed05g1813 Sed-Chr5:31743957 4.50E-60 dispersed
Sed05g1813 Sed-Chr5:31743957 Sed13g1941 Sed-Chr13:24319361 7.10E-152 dispersed
Sed09g0663 Sed-Chr9:8702533 Sed05g1813 Sed-Chr5:31743957 4.00E-19 dispersed
Sed09g0664 Sed-Chr9:8702663 Sed05g1813 Sed-Chr5:31743957 3.70E-19 dispersed
Sed13g0045 Sed-Chr13:297415 Sed05g1813 Sed-Chr5:31743957 4.70E-26 dispersed
Sed05g1811 Sed-Chr5:31688023 Sed05g1813 Sed-Chr5:31743957 1.20E-35 proximal
Sed05g1813 Sed-Chr5:31743957 Sed05g1814 Sed-Chr5:31743957 2.00E-162 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1813 K17506 - csv:101216117 551.206