Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1814 | ATGGGCTATCTGAATTCAGTTTTGTCTTGCTCCACCCACATTCATGCGGATGATGCTCCTGTTAGCGGCGGAGGATTAAGTCAGAATGGGAAGTTTAGCTACGGATATGCTAGCTCTCCGGGGAAGAGATCTTCGATGGAAGATTTTTACGAGACACGAATCGATGGCGTGGATGGAGAAATTGTTGGTCTATTTGGTGTTTTTGATGGCCATGGTGGAGCACGAGCCGCGGAGTATGTTAAGCACAATCTTTTTAGTAACTTGATCAGTCATCCGAAGTTCATATCGGATACCAAATCCGCTATATCTGATGCATATAACCACACAGACTCAGAATTTTTGAAGTCAGAAAATAATCAAAACAGAGATGCTGGATCTACTGCTTCCACTGCCATTCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGAGACTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCCGACCAAACTGATGAGCGACGGCGAATTGAGGATGCAGGGGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGCGATAGGCTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAAGAAAAGATCGATAGCTCGCTCGAGTTTCTCATACTCGCAAGTGATGGACTATGGGATGTCGTCACTAATGAGGAAGCTGTTGCTATGACTAAACCAATTCAGGATGCAGAAGAGGCGGCAAAGAGATTGATGCAAGAAGCATATCAAAGAGGCAGTGCAGATAACATTACTTGCGTCGTCGTCCGTTTCTTGGCGAATCAAGGAAGTCCCTCTCCGTGA | 867 | 46.14 | MGYLNSVLSCSTHIHADDAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAISDAYNHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVAMTKPIQDAEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSP | 288 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31743957 | 31748969 | - | Sed0024478.2 | Sed05g1814 | 714440 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1814 | 288 | SUPERFAMILY | PP2C-like | 27 | 279 | IPR036457 | - | |
Sed05g1814 | 288 | SMART | PP2C_SIG_2 | 44 | 279 | IPR001932 | - | |
Sed05g1814 | 288 | Gene3D | - | 25 | 283 | IPR036457 | - | |
Sed05g1814 | 288 | PANTHER | PROTEIN PHOSPHATASE | 33 | 278 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed05g1814 | 288 | SMART | PP2C_4 | 23 | 277 | IPR001932 | - | |
Sed05g1814 | 288 | ProSitePatterns | PPM-type phosphatase domain signature. | 64 | 72 | IPR000222 | GO:0043169(InterPro) | |
Sed05g1814 | 288 | Pfam | Protein phosphatase 2C | 62 | 272 | IPR001932 | - | |
Sed05g1814 | 288 | CDD | PP2Cc | 32 | 279 | IPR001932 | - | |
Sed05g1814 | 288 | FunFam | probable protein phosphatase 2C 59 | 25 | 283 | - | - | |
Sed05g1814 | 288 | ProSiteProfiles | PPM-type phosphatase domain profile. | 33 | 279 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1811 | Sed-Chr5:31688023 | Sed05g1814 | Sed-Chr5:31743957 | 1.20E-35 | dispersed | |
Sed05g1814 | Sed-Chr5:31743957 | Sed13g1941 | Sed-Chr13:24319361 | 7.10E-152 | dispersed | |
Sed05g1813 | Sed-Chr5:31743957 | Sed05g1814 | Sed-Chr5:31743957 | 2.00E-162 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1814 | K17506 | - | csv:101216117 | 551.206 |