Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1816 ATGGCGGCTCTTTCTCTCTCCTCTTTTTCTTCTATGCTTCTCTTTGCTTTAATTTGCTTCCAATTTTTTCACTCTTTCGCCGGAAAAATCTCGCCGTCCGACCACCGCCTCACCGTCCAACTCGCCGATCTTTTCCCGTCCGCCGCCTGCACCCGCCGCTCCGCCCAAGCCAAAATTTTAAGTTTAGGAGGACAACAATCATCGTTGGAGGTGATTCACAGGCATGGGGCATGTGTTGATGGAGTTTCAAAAGTTTCGACGACTGTAGAAACATTTGTTCAAGATGAAGCTCGAGTGGATTTGATCCACTCAAAATTTTCAGAGGAGTTGAAAGAAATGGATGGTTTAGGACCGTCGAAGGTAACAAAGATTCCGGCAAAGTCTGGTGCTAGCATCGGGTCCGGCAACTACATAGTGAACGTGGGTTTGGGAACGCCGAAGAAATACTTGTCACTTATATTCGATACAGGAAGCGACCTGACGTGGACGCAATGCCAGCCATGCGCTAGATATTGTTACAACCAAAAGGATGTTGTTTTCGCCCCTTCCCTGTCCACTTCTTATTCCAACGTCTCTTGTTCTTCACCTCAGTGTTCTCAACTTCAATCTGGCACGGGAAACCAACCCGGTTGCTCTACTGCAAAATCGTGTATTTACGGAATACAATACGGTGATCAATCTTTCTCAGTCGGATATTTTGCTAAAGAAACCCTAACATTGTCCTCCACCGACGTCATCGATAATTTCCTCTTCGGTTGCGGCCAAAATAATCGTGGACTTTTTGGCAGCGCCGCCGGCCTCATTGGCCTTGGCCAAGACAAAATCTCCATTGTTAAACAGACCGCTAAAAAGTATGGTCAGGTCTTTTCCTACTGCCTCCCCAAATCCTCCAGTTCCACTGGCTACCTAACTTTTGGTCGCGGTGGCTACACCAGTGCTCTGAAATACACGCCAATCACAAAAGCACATGGCGTTGCGAATTTCTACGGCGTCAACATTGTCAGCATGAAGGTTGGCGGAACTCAGATCCCTATTTCATCGTCGGTCTTCTCAACATCCGGTGCAATCATCGATTCTGGCACGGTGATCACACGTTTGCCACCGGACGCATACAATGCCTTGAAATTGGCATTTCAAAAAGGAATGACAAAGTATCCGAAGGCACCAGAGCTTTCAATTCTCGACACATGTTACGATCTGAGCAAGTACACAACCGTGGAGGTTCCTAAAGTGGCCTTCGTTTTTAGTGGAGGAACAGAGCTCGATCTCGACGCCACAGGAATCTTGTATGGAGCATCAACGACACAGGTCTGTTTGGCATTTGCTGGAAATCAGGATCCAAGCACTGTCACCATCATCGGAAATGTGCAGCAGAAAACTCTACAGGTGGTCTATGATGTAGCCGGAGGGAAAATTGGATTCGGTTATAATGGATGTTAG 1440 47.29 MAALSLSSFSSMLLFALICFQFFHSFAGKISPSDHRLTVQLADLFPSAACTRRSAQAKILSLGGQQSSLEVIHRHGACVDGVSKVSTTVETFVQDEARVDLIHSKFSEELKEMDGLGPSKVTKIPAKSGASIGSGNYIVNVGLGTPKKYLSLIFDTGSDLTWTQCQPCARYCYNQKDVVFAPSLSTSYSNVSCSSPQCSQLQSGTGNQPGCSTAKSCIYGIQYGDQSFSVGYFAKETLTLSSTDVIDNFLFGCGQNNRGLFGSAAGLIGLGQDKISIVKQTAKKYGQVFSYCLPKSSSSTGYLTFGRGGYTSALKYTPITKAHGVANFYGVNIVSMKVGGTQIPISSSVFSTSGAIIDSGTVITRLPPDAYNALKLAFQKGMTKYPKAPELSILDTCYDLSKYTTVEVPKVAFVFSGGTELDLDATGILYGASTTQVCLAFAGNQDPSTVTIIGNVQQKTLQVVYDVAGGKIGFGYNGC 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31758392 31762359 - Sed0024771.1 Sed05g1816 714442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1816 479 PRINTS Pepsin (A1) aspartic protease family signature 355 366 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed05g1816 479 PRINTS Pepsin (A1) aspartic protease family signature 451 466 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed05g1816 479 PRINTS Pepsin (A1) aspartic protease family signature 143 163 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Sed05g1816 479 ProSiteProfiles Peptidase family A1 domain profile. 137 475 IPR033121 -
Sed05g1816 479 FunFam Aspartyl protease AED1 116 306 - -
Sed05g1816 479 SUPERFAMILY Acid proteases 131 479 IPR021109 -
Sed05g1816 479 Pfam Xylanase inhibitor N-terminal 137 306 IPR032861 -
Sed05g1816 479 Gene3D Acid Proteases 307 479 IPR021109 -
Sed05g1816 479 CDD cnd41_like 136 479 IPR033873 -
Sed05g1816 479 Pfam Xylanase inhibitor C-terminal 329 474 IPR032799 -
Sed05g1816 479 FunFam Aspartyl protease AED1 308 479 - -
Sed05g1816 479 Gene3D Acid Proteases 118 306 IPR021109 -
Sed05g1816 479 PANTHER ASPARTYL PROTEASES 55 479 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1816 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1816 Sed-Chr5:31758392 Sed07g0720 Sed-Chr7:5386023 9.50E-77 dispersed
Sed13g1945 Sed-Chr13:24337000 Sed05g1816 Sed-Chr5:31758392 9.40E-226 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g614 . . . Bda03g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00099 . . Sed05g1816 . . . . . . . . Bhi09g03045 Tan01g3527 Cmetu07g1748 . Hepe01g1942 Mch11g0478 . . . . . . . . . . . Cme07g00147
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36