Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1817 ATGAAGGAGCCGTTGGATAGGACGAAAGTAGTGATTCGGCACTTGCCCCCTTCTCTCCCTCACTCAGATCTCTTCCGCCATATTGATGATCGATTCGCCGGTCGTTACAATTGGTCTTATTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGGTTCGCTCGAGCTTACATAGATTTTACGAGACCTGAAGATGTTTTCGAGTTTTCTGAGTTCTTCAATGGCCATGTTTTCGTTAATGAGAAAGGTGCCCAGTGTAAGGCTGTAGTTGAATATGCACCTTCACAGCGTGTTCCTATTTCATCTACCAAGAAGGATGGTCGTGAGGGGACCATATTCAAAGACCCAGATTATTTGGAGTTTCTCAAACTCATTGCAAAGCCTGCTGAGTATCTTCCTAGTGCTGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGCTACTTCAAAAGAAAATCCAATTGTTACCCCTCTTATGGAGTTTATTCGCCAGAAACGGGCTGTAGAAAGTGGAACTCAGGGATCAGTCCCTCGGAAGGTTAAAAGAGGTGGGGCAGCTTCCTCTAGAAAGTCTGAGTCGAATTCCATGAAGCGTGGGATGGAGAAGAAGAAGTATATTTTAAAGGACAGTCTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCTAGGCGAGAGGATCAGTCGGCCACTTCGAGTGGAATTGGAATTTCTGATGTTGGTACAGTTGACTCCGGAAAGAAAAAAATTCTGCTTCTCAAGGGAAAAGAGCGAGACATATCTCATTTGCAGAGCACGACATCTTCTGGGAATTCCCCTGCTAGTTCTACAAAACAGAACCAGAGGCGGGAGGCTAGTGGAAGCATGATCAGAAGCATTCTTGTAAATAATGAAGCACGCCCTGGACAGAATCCTTCAGTAGCCCAGCCTCATAAAAAAATTCAGATTCTCAACTCAGACAATGGGAAGCGACCACCTCGTCTCATTAATGCTCGATCTGGGTCTAATGATATGTCCAGTGGCAGTAACGAACCGAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTACAGAAAGTAAGTTTAATAAAAAGGAACTTCATGGCCTCGGTAATGCTAGTGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCGCCACGTAGCCGTTCGGATGCCTCGGTCTCACAACTTGATGAATCCTTTTCTGACTCAGTTGAAGCATACCGTGGCAAAATGAAAGACGATATTCATGGAAACAAGAGTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAATGGAGAATGGTACTAGTAGACACGTTGGACGTCGTGGGGCTGGCCATGTTTTAAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAACCATCCAAAAGAGGCATTGCCGGTGGCCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAA 1500 45.13 MKEPLDRTKVVIRHLPPSLPHSDLFRHIDDRFAGRYNWSYYRPGKTSQKDQRFARAYIDFTRPEDVFEFSEFFNGHVFVNEKGAQCKAVVEYAPSQRVPISSTKKDGREGTIFKDPDYLEFLKLIAKPAEYLPSAEIQLERKEAEQSATSKENPIVTPLMEFIRQKRAVESGTQGSVPRKVKRGGAASSRKSESNSMKRGMEKKKYILKDSLKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTVDSGKKKILLLKGKERDISHLQSTTSSGNSPASSTKQNQRREASGSMIRSILVNNEARPGQNPSVAQPHKKIQILNSDNGKRPPRLINARSGSNDMSSGSNEPNPSGSEGDGKRATESKFNKKELHGLGNASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLDESFSDSVEAYRGKMKDDIHGNKSGDVTTTVSGRSSSMENGTSRHVGRRGAGHVLKDDGSLNPNEGKPSKRGIAGGHEKQVWVQKSSSGS 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31796471 31804678 + Sed0001549.1 Sed05g1817 714443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1817 499 Gene3D - 2 97 IPR012677 -
Sed05g1817 499 MobiDBLite consensus disorder prediction 433 452 - -
Sed05g1817 499 MobiDBLite consensus disorder prediction 358 397 - -
Sed05g1817 499 MobiDBLite consensus disorder prediction 266 290 - -
Sed05g1817 499 MobiDBLite consensus disorder prediction 416 432 - -
Sed05g1817 499 MobiDBLite consensus disorder prediction 168 245 - -
Sed05g1817 499 MobiDBLite consensus disorder prediction 336 353 - -
Sed05g1817 499 MobiDBLite consensus disorder prediction 228 243 - -
Sed05g1817 499 MobiDBLite consensus disorder prediction 303 499 - -
Sed05g1817 499 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 1 456 IPR039722 GO:0000184(PANTHER)|GO:0000184(InterPro)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0005737(PANTHER)|GO:0045727(PANTHER)
Sed05g1817 499 Pfam Smg-4/UPF3 family 7 168 IPR005120 -
Sed05g1817 499 MobiDBLite consensus disorder prediction 195 226 - -
Sed05g1817 499 MobiDBLite consensus disorder prediction 303 320 - -
Sed05g1817 499 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676(InterPro)
Sed05g1817 499 CDD RRM_like_Smg4_UPF3 9 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1817 K14328 - - csv:101208317 855.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1817 Sed-Chr5:31796471 Sed10g2124 Sed-Chr10:37705368 1.20E-231 dispersed
Sed05g1817 Sed-Chr5:31796471 Sed05g1818 Sed-Chr5:31796471 7.50E-250 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1817 . . . . . . . . Bhi06g00237 Tan10g2036 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003365 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 4 1 49