Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1825 ATGTGTAAAACTTCTCCTCACTTTCCTTTTAGTATGTTCAAGTTCTTCTCTGTTCTGATCTTGATCCTCCCAGCTGCCGCTCTAGTCCAAGGTAGGCGGGAGCTGCAGGAGTCGTGCACTTGCGATTCTGCTGCCGCCGCTGTCGTCACCGAGCACAATGCAAAGGAGGCCATTAAGTACAAGGTGGGCTCGATCGCTTCGGTGCTGGTGGCGGGAGCTGCGGGTGTGAGCCTTCCTTTGCTAGGCAAGAGAGTTCCATGTCTAAGGCCTGAAAATGACATATTTTTCATGATCAAAGCTTTTGCTGCTGGGGTGATCCTAGGCACGGGGTTCATTCACATACTGCCCGATGCTTTCCAAGACCTGACCTCCCCCTGCATCGGGCAGAACCCTTGGGGCCATTTCCCATTTGCTGGCTTTATTGCAATGGCCTCCTCCATTGGCACCTTGATGGTGGACACTTTTGCAACCAGCTTTTACCAGAGGCGCCACTTCAGTAAAACCAAGCTGGCTCAGGTAGTTATTGCAGATCAGGAGAGGGGCGAGGAGCATGCCGGTCACGTGCATGTCCACACGCACGCCACGCATGGCCACGCTCACGGCTCTGCTGCTGCCCCTGCCGGGGAATTGAGCATGTCTCAGTTGATTCGGTATCGAATTATATCTCAGGTGTTGGAGTTAGGAATTGTGGTTCATTCGGTCATCATTGGAATAACTCTGGGTGGGTCTAATAGCCCGCAGACCATCAAGCCGCTGCTGGTGGCGCTTTCGTTCCATCAATTTTTCGAGGGCATGGGACTGGGAGGCTGCATTTCGCAGGCGCAGTTCAGGTGGCGGTCGGCGGCGGTAATGGTGAGCTTCTTCTCGGTGACAGCGCCGGTGGGAATCGCAGTCGGAATGGGGATGTCGGGAGTGTACAGAGACAACAGGCGGAGGAGCATGGTGGTGGAGGGAAGCATGAACGCTGCATCGGCGGGGATATTGATATACATGGCGCTGGTGGACCTTCTTGCGGCGGACTTCATGAACCCTCGGATGCAGAATAATTTGGGCCTTCAATTGGGAGCTAATGTCTCTCTTCTTCTAGGCGCCGCTTGCATGTCTGTGTTGGCCAAATGGGCTTAA 1125 54.22 MCKTSPHFPFSMFKFFSVLILILPAAALVQGRRELQESCTCDSAAAAVVTEHNAKEAIKYKVGSIASVLVAGAAGVSLPLLGKRVPCLRPENDIFFMIKAFAAGVILGTGFIHILPDAFQDLTSPCIGQNPWGHFPFAGFIAMASSIGTLMVDTFATSFYQRRHFSKTKLAQVVIADQERGEEHAGHVHVHTHATHGHAHGSAAAPAGELSMSQLIRYRIISQVLELGIVVHSVIIGITLGGSNSPQTIKPLLVALSFHQFFEGMGLGGCISQAQFRWRSAAVMVSFFSVTAPVGIAVGMGMSGVYRDNRRRSMVVEGSMNAASAGILIYMALVDLLAADFMNPRMQNNLGLQLGANVSLLLGAACMSVLAKWA 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31858292 31861449 - Sed0016211.1 Sed05g1825 714451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1825 374 Pfam ZIP Zinc transporter 59 371 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Sed05g1825 374 PANTHER ZINC/IRON TRANSPORTER 55 373 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Sed05g1825 374 NCBIfam ZIP zinc/iron transport family 49 374 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1825 Sed-Chr5:31858292 Sed06g1122 Sed-Chr6:31962100 1.30E-97 dispersed
Sed05g1825 Sed-Chr5:31858292 Sed08g1963 Sed-Chr8:34085745 4.30E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1825 K14709 - csv:101216720 509.22