Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1833 ATGCATAAATTAAGCAGAGGACACCGAGATAAACTCCAGCAGTTTATGGCTATAACTGGTACAAGTGAAAAAGTTGCTCATCAGGCCCTGAAGGCTAGTGATTGGCAACTTGAAGGAGCTATTGATGTATTTTACAGCCAACCCCAAAGTAAAGCATTCACTGACTCAAGACATTTGGAAGAGCTTTATAACAGATATAAAGATCCATATGTCGATATGATATTAGCTGATGGTATCTCACTGCTCTGCAATGACCTTCTGGTGGATCCTCAAGATATAGTCATGTTGGTTGTTTCCTGGCATATGAAGGCGAACACCATGTGTGAGTTTTCCAAACAGGAGTTTATAGGTGGATTACAAGCACTAGGGATAGATTCTCTGGAGAGGTTCCGAGAAAGGATACCGTATATGCGCTCTGAGTTAAAAGACGAACAAAAGTTTCGTGATATTTACAACTTCGCATTTGGTTGGGCAAAAGAAAAGGGGCAAAAATCTTTAGCATTGGACACTGCAATTGGAATGTGGCAGTTACTATTTGCTGAAAAGCAGTGGCCCCTGGTTGACCACTGGTGTCAGTTCTTGCAGGTAATTCTGTTGAACTTAATCGCCACTAGTTTTCTCAAACATTTTTATAGAATGTGCAACCATAGGATGTGA 657 40.79 MHKLSRGHRDKLQQFMAITGTSEKVAHQALKASDWQLEGAIDVFYSQPQSKAFTDSRHLEELYNRYKDPYVDMILADGISLLCNDLLVDPQDIVMLVVSWHMKANTMCEFSKQEFIGGLQALGIDSLERFRERIPYMRSELKDEQKFRDIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQVILLNLIATSFLKHFYRMCNHRM 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31866608 31872443 + Sed0027108.8 Sed05g1833 714459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1833 218 Pfam Cullin binding 131 195 IPR005176 -
Sed05g1833 218 SUPERFAMILY UBA-like 5 46 IPR009060 GO:0005515(InterPro)
Sed05g1833 218 CDD UBA_DCNL 8 48 - -
Sed05g1833 218 PANTHER RP42 RELATED 24 195 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Sed05g1833 218 Pfam UBA-like domain 10 49 - -
Sed05g1833 218 Gene3D - 5 47 - -
Sed05g1833 218 ProSiteProfiles DCUN1 domain profile. 54 218 IPR005176 -
Sed05g1833 218 Gene3D Cullin, PONY binding domain 143 214 IPR042460 -
Sed05g1833 218 FunFam Defective in cullin neddylation protein 6 47 - -
Sed05g1833 218 Gene3D - 52 142 - -
Sed05g1833 218 FunFam Defective in cullin neddylation protein 53 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1833 K17822 - - csv:101216476 381.333
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1830 Sed-Chr5:31866608 Sed05g1833 Sed-Chr5:31866608 5.60E-113 dispersed
Sed05g1831 Sed-Chr5:31866608 Sed05g1833 Sed-Chr5:31866608 1.00E-126 dispersed
Sed05g1832 Sed-Chr5:31866608 Sed05g1833 Sed-Chr5:31866608 1.30E-68 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1150 Blo04g00462 Blo13g00602 . . . . Bma08g00821 . . . . . . . Sed05g1833 Cpe04g00866 . Bhi05g01993 Tan02g0025 . . . . . . . . . . . . . . . . . Csa07g01210 . . . . . . Bpe15g00919 . Bma03g00495 . . . . . . . . Cpe15g00904 . . . . . . . . . . . . . . . . . . Cme01g01501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003443 1 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 10 2 1 48