Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1833 ATGCATAAATTAAGCAGAGGACACCGAGATAAACTCCAGCAGTTTATGGCTATAACTGGTACAAGTGAAAAAGTTGCTCATCAGGCCCTGAAGGCTAGTGATTGGCAACTTGAAGGAGCTATTGATGTATTTTACAGCCAACCCCAAAGTAAAGCATTCACTGACTCAAGACATTTGGAAGAGCTTTATAACAGATATAAAGATCCATATGTCGATATGATATTAGCTGATGGTATCTCACTGCTCTGCAATGACCTTCTGGTGGATCCTCAAGATATAGTCATGTTGGTTGTTTCCTGGCATATGAAGGCGAACACCATGTGTGAGTTTTCCAAACAGGAGTTTATAGGTGGATTACAAGCACTAGGGATAGATTCTCTGGAGAGGTTCCGAGAAAGGATACCGTATATGCGCTCTGAGTTAAAAGACGAACAAAAGTTTCGTGATATTTACAACTTCGCATTTGGTTGGGCAAAAGAAAAGGGGCAAAAATCTTTAGCATTGGACACTGCAATTGGAATGTGGCAGTTACTATTTGCTGAAAAGCAGTGGCCCCTGGTTGACCACTGGTGTCAGTTCTTGCAGGTAATTCTGTTGAACTTAATCGCCACTAGTTTTCTCAAACATTTTTATAGAATGTGCAACCATAGGATGTGA 657 40.79 MHKLSRGHRDKLQQFMAITGTSEKVAHQALKASDWQLEGAIDVFYSQPQSKAFTDSRHLEELYNRYKDPYVDMILADGISLLCNDLLVDPQDIVMLVVSWHMKANTMCEFSKQEFIGGLQALGIDSLERFRERIPYMRSELKDEQKFRDIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQVILLNLIATSFLKHFYRMCNHRM 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31866608 31872443 + Sed0027108.8 Sed05g1833 714459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1833 218 Pfam Cullin binding 131 195 IPR005176 -
Sed05g1833 218 SUPERFAMILY UBA-like 5 46 IPR009060 GO:0005515(InterPro)
Sed05g1833 218 CDD UBA_DCNL 8 48 - -
Sed05g1833 218 PANTHER RP42 RELATED 24 195 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Sed05g1833 218 Pfam UBA-like domain 10 49 - -
Sed05g1833 218 Gene3D - 5 47 - -
Sed05g1833 218 ProSiteProfiles DCUN1 domain profile. 54 218 IPR005176 -
Sed05g1833 218 Gene3D Cullin, PONY binding domain 143 214 IPR042460 -
Sed05g1833 218 FunFam Defective in cullin neddylation protein 6 47 - -
Sed05g1833 218 Gene3D - 52 142 - -
Sed05g1833 218 FunFam Defective in cullin neddylation protein 53 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1830 Sed-Chr5:31866608 Sed05g1833 Sed-Chr5:31866608 5.60E-113 dispersed
Sed05g1831 Sed-Chr5:31866608 Sed05g1833 Sed-Chr5:31866608 1.00E-126 dispersed
Sed05g1832 Sed-Chr5:31866608 Sed05g1833 Sed-Chr5:31866608 1.30E-68 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1833 K17822 - csv:101216476 381.333