Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1836 ATGGCATACATGCTCAAGTTTGATTCTACACATGGTAATTTCAATGGCGCGATTAGCATTGTGGATGATTCAACTTTGGAAATCAATGGGAAACAAATAAAAGTTTTGAGTAAAAGGGATCCGGCAGAAATTCCTTGGGGTGAATTTGGGGTCGAGTATGTTGTTGAATCCTCTGGGGTTTTCACGACAACAAATAAGGCATCAGCACATTTGAAGGGTGGAGCAAGGAAAGTTGTCATATCAGCTCCATCAGCTGATGCACCTATGTTCGTTGTTGGAGTTAATGAGAAGACATATAAGCCAAACATGGATATTGTTTCAAATGCAAGTTGTACTACGAATTGTCTTGCTCCTCTTGCAAAGGTGGTTCATGAGATTTTTGGTATAGCAGAAGGTTTGATGACAACCGTGCATGCAACTACAGCTACTCAAAAGACTGTTGATGGCCCCTCAATGAAGGATTGGCGTGGCGGCCGTGGAGCTGCACAAAATATTATCCCAAGTTCTACAGGTGCTGCAAAGGCTGTTGGAAAGGTTCTTCCTGAGCTTAACGGAAAACTTACAGGCATGGCATTTCGTGTTCCAACACCTAATGTTTCTGTTGTGGACTTGACTTGTAGACTAGAGAAGAGTGCTTCTTATGAAGATGTAAAAGCTGCAATCAAGTATGCCTCAGAAGGCCCACTCAAGGGTATCCTTGGTTACACGGATGAGGACGTTGTCTCGAATGACTTTGTTGGTGATTCTAGGTCTAGCATATTCGATGCAAAAGCCGGAATAGGTCTTAGCGACTCCTTCATGAAGCTCGTCTCCTGGTATGACAACGAGTGGGGATACAGCAACCGCGTGCTGGACCTCATAGAGCACATGGCACTGGTGGCAGCCAAGTGA 891 44.44 MAYMLKFDSTHGNFNGAISIVDDSTLEINGKQIKVLSKRDPAEIPWGEFGVEYVVESSGVFTTTNKASAHLKGGARKVVISAPSADAPMFVVGVNEKTYKPNMDIVSNASCTTNCLAPLAKVVHEIFGIAEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSDSFMKLVSWYDNEWGYSNRVLDLIEHMALVAAK 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31873346 31877875 - Sed0017423.3 Sed05g1836 714462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1836 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 127 IPR036291 -
Sed05g1836 296 Gene3D - 1 289 - -
Sed05g1836 296 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 1 63 IPR020828 GO:0051287(InterPro)
Sed05g1836 296 FunFam Glyceraldehyde-3-phosphate dehydrogenase 110 275 - -
Sed05g1836 296 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 116 273 IPR020829 GO:0016620(InterPro)
Sed05g1836 296 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 110 273 - -
Sed05g1836 296 FunFam Glyceraldehyde-3-phosphate dehydrogenase 1 125 - -
Sed05g1836 296 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 291 IPR020831 GO:0016620(InterPro)
Sed05g1836 296 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 109 116 IPR020830 GO:0016620(InterPro)
Sed05g1836 296 Gene3D Dihydrodipicolinate Reductase; domain 2 110 275 - -
Sed05g1836 296 PIRSF GAPDH 1 295 IPR020831 GO:0016620(InterPro)
Sed05g1836 296 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 70 83 IPR020831 GO:0016620(InterPro)
Sed05g1836 296 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 105 123 IPR020831 GO:0016620(InterPro)
Sed05g1836 296 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 229 244 IPR020831 GO:0016620(InterPro)
Sed05g1836 296 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 132 148 IPR020831 GO:0016620(InterPro)
Sed05g1836 296 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 189 206 IPR020831 GO:0016620(InterPro)
Sed05g1836 296 SMART gp_dh_n_7 1 111 IPR020828 GO:0051287(InterPro)
Sed05g1836 296 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 1 285 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1834 Sed-Chr5:31873346 Sed05g1836 Sed-Chr5:31873346 2.60E-168 dispersed
Sed05g1836 Sed-Chr5:31873346 Sed05g3308 Sed-Chr5:42442831 7.80E-154 dispersed
Sed05g1835 Sed-Chr5:31873346 Sed05g1836 Sed-Chr5:31873346 7.30E-124 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1836 K00134 - csv:101215988 560.451