Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1847 ATGTCTCCCGGTGTCTGGTCTAGGGATGGGCGTGGTTACCCGGGTATAGTGGAACGAAGCTCGGGAAATTTCCCGGTTAAAAGAAAACACAGAACTTTGTATCCCAACTTTTTTTTTTTGGGTGCAGCAAGAGCTCTAAATTCCATATTTTCACAATGGGGTATATCGGCACCAGCAGGGGCATGGAATATAAGTGGCAATCTATGCAGTGGGAGGGCAGTCGACACTACTACCGCCATCGACAATGGTGGTACCCTTAATCCTTTTATAAAATGTGATTGCTCAGCCAACAACGGTGATACTTGCCACATTACTCAATTGTTTGTTTATGCACTAGATACGGGTGGTGTACTCCCATCGGAGCTATGGACATTAACTTCCCTCACCTATCTAAAGTTGGATCAGAATTTCTTAACTGGAACACTATCTGCATCAGTTGGTAATCTCACACAATTACAAACCTTGACCCTTGGCATCAATGCTTTATCTGGGGAACTTCCAAAGGAACTTGGATCTCTTACTAATCTGAAAATGTTAGGATTCGGGTCCAACCGTTTTTCTGGTTCCTTGCCACCAGAGCTCGGAAATCTTTCTATGTTAGAGGAACTATACATTGATAGCTCGGGAGTTTCTGGTGATATTCCTCAATCATTTTCAAGTCTAACAAACTTGCGAATCATATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGAGTTCATCGGAAGTTGGACAGGTCTCACAATTTTGAGGTTGCAAGGAAACTCCTTCTCAGGTCCCATACCATCCACATTTTCGAAATTGACATCTTTGATTGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTCGCATTCATCGGTAATATGAAATCTTTAACTGTCCTGGTGTTGAGAAATAGTAATATTTCAGGTCCAATTCCATCCAACATTGGAGAATTTCAAAGACTTGTCCACCTGGACTTGAGCTTCAACAGCTTGACAGGAGAGATTCCAAGCTCACTCTTCAATTTGGGTTCACTGTCACACTTGTTTCTTGGAAATAACAAGTTAAATGGGACCATACCTGTACAGAAGAGTATTTCCCTTCTGAATATAGACTTATCATATAATGATTTATCAGGGAACTTTCCTTCTTGGATCAACCAGCCAGACTTACAGCTAAATTTAGTTGCCAACAGCTTCAGAATTGATAGTTTTTCAAGTAGCGGTAGTTTGCCTTTTGGATTGGACTGTCTTCAACGCAACTTTCCTTGTAATCGAAATCTTCCTATATATTCTTATTTCGGGATCAAGTGTGGTGGCCCGGAAATAAGAAGTTCATCCGGGGTTACGTTTGAAAGGGAAAATGAGACACTCGGTCCGGCTACGTACTTTGTTACCGAGTCTAAAAGGTGGGCCGTTAGTAATACTGGATACTTTACCGGATCTAACAATCCTCAATACAAAGACAACGAATGGTCTCTCTCAAACACCTTTGTCGCAGAGCTTTTTCAAACACATCGACTATCTGCTTCATCATTGAGATACTATGGACTCGGGCTTCAGAATGGCAACTACACTGTAATCCTTCAGTTTGCAGAAATAGCATTCCCAAATTCAACAGCATGGCGAAACAGTGGGAGGCGTGTCTTTGATGTATATATCCAGGGAAATCGTGTCTTAGAGAATTTTGATATTAAAAAAAAGGCAGGTGGGCCATTCCTTGCTGTTATAGAAAAGTTTACGGCTGAAGTGACAGAAAACTTCCTGGAAATTCATCTTTTTTGGGCTGGGAAAGGTACCTGTTGCATACCTACCCAGGGTGCTTATGGACCCTCAGTTTCAGCCATCAGTGCTACTTCAGATTTTGAACCAACTGTTAGTAACATACCTCCAAGTACCAAGGAGAATAATACCCCCAAAAGTACTGAGGAGAATCACAAAACGGGCCTAACTGTAGGACTTGTTGTTGGCTTAGGATCTGTTCTGTTTCTGATTACTGGTGCAGTTTTCATTGTTTTCCAAAGGAAAAAGCCTCGTGCCTATGAAGATGAAGGTCTTCTCGGAGTAGATGCTAGACCGTACACATTTAGTTTTTCTGTATTAAGGGGTGCTACAAACGACTTTAGTTCATCCAACAAACTTGGTGAGGGAGGGTTTGGGCCTGTTTACAAGGGAACACTGAGTGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCGTCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGTTACAATATCTGCAGTGCAACATCGAAACCTTGTGAAACTATATGGATGTTGCATCGAGGCCGATAAACGTCTTCTTGTCTATGAGTTTCTTGAAAATAAGAGTCTTGACCAAGCACTATTTGAAAAAAGACATGTTATTATTGATTGGCCAACACGTTTCAACATATGCGTGGGTATAGCGAAAGGTCTCGCTTACCTACATGAGGAATCTAGACTTCGGATAGTGCACAGAGACGTAAAGGCCAGTAACATCCTGCTTGATGGTGATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACTCGGGTTGCTGGGACTATTGGCTATCTTGCACCTGAGTATGCCATGCTTGGCCACCTTACGGAGAAAGCTGATGTCTTTGGATTCGGTGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCTGATCCTAGCTTAGAGCAAGACAAAGTTTATCTTCTCCATTGGGCATGGCACCTCCATGAAAACAACCATAAACTTGAGATGGTGGACTCTGAATTATCCGAGTACAGCAAGGAGGATGTAGAAAGGGTGATTTCTATAGCTCTTCTGTGCACTCAAACATCCCCATCTCTTCGGCCATCGATGTCTCGCGTGGTGGCAATGCTGGCTGGAGACATGGAAGTGCCGGCTGTAACAACCAAACCAGGATACCTGACTGATTGGAATTTTGATGACATTACAAGCTTTATAGATGTTGATGATCTATCAACCGAAGAACCTGATGCCGGCCGTTATGCATCAACAAGTCTGAGTATTGTTCATGCAAATCGCTCGCCAACGAGAGATTCTGCACCAATGCTCCGTGCAGTATCAAGGCGGAGTATGTGA 3144 42.68 MSPGVWSRDGRGYPGIVERSSGNFPVKRKHRTLYPNFFFLGAARALNSIFSQWGISAPAGAWNISGNLCSGRAVDTTTAIDNGGTLNPFIKCDCSANNGDTCHITQLFVYALDTGGVLPSELWTLTSLTYLKLDQNFLTGTLSASVGNLTQLQTLTLGINALSGELPKELGSLTNLKMLGFGSNRFSGSLPPELGNLSMLEELYIDSSGVSGDIPQSFSSLTNLRIIWASDNEFTGRIPEFIGSWTGLTILRLQGNSFSGPIPSTFSKLTSLIELRIGDLSNGSSSLAFIGNMKSLTVLVLRNSNISGPIPSNIGEFQRLVHLDLSFNSLTGEIPSSLFNLGSLSHLFLGNNKLNGTIPVQKSISLLNIDLSYNDLSGNFPSWINQPDLQLNLVANSFRIDSFSSSGSLPFGLDCLQRNFPCNRNLPIYSYFGIKCGGPEIRSSSGVTFERENETLGPATYFVTESKRWAVSNTGYFTGSNNPQYKDNEWSLSNTFVAELFQTHRLSASSLRYYGLGLQNGNYTVILQFAEIAFPNSTAWRNSGRRVFDVYIQGNRVLENFDIKKKAGGPFLAVIEKFTAEVTENFLEIHLFWAGKGTCCIPTQGAYGPSVSAISATSDFEPTVSNIPPSTKENNTPKSTEENHKTGLTVGLVVGLGSVLFLITGAVFIVFQRKKPRAYEDEGLLGVDARPYTFSFSVLRGATNDFSSSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKSQFVAEIVTISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFEKRHVIIDWPTRFNICVGIAKGLAYLHEESRLRIVHRDVKASNILLDGDLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMLGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLHWAWHLHENNHKLEMVDSELSEYSKEDVERVISIALLCTQTSPSLRPSMSRVVAMLAGDMEVPAVTTKPGYLTDWNFDDITSFIDVDDLSTEEPDAGRYASTSLSIVHANRSPTRDSAPMLRAVSRRSM 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31925212 31938747 + Sed0000303.3 Sed05g1847 714473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1847 1047 CDD STKc_IRAK 712 974 - -
Sed05g1847 1047 SMART serkin_6 706 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1847 1047 SUPERFAMILY Protein kinase-like (PK-like) 689 974 IPR011009 -
Sed05g1847 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1847 1047 Gene3D Ribonuclease Inhibitor 284 419 IPR032675 -
Sed05g1847 1047 Gene3D Ribonuclease Inhibitor 100 283 IPR032675 -
Sed05g1847 1047 FunFam Putative LRR receptor-like serine/threonine-protein kinase 283 406 - -
Sed05g1847 1047 MobiDBLite consensus disorder prediction 623 643 - -
Sed05g1847 1047 Gene3D - 430 619 - -
Sed05g1847 1047 ProSiteProfiles Protein kinase domain profile. 706 983 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1847 1047 FunFam Putative LRR receptor-like serine/threonine-protein kinase 782 986 - -
Sed05g1847 1047 SUPERFAMILY L domain-like 101 405 - -
Sed05g1847 1047 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 61 1000 IPR051824 GO:0005886(PANTHER)
Sed05g1847 1047 Gene3D Transferase(Phosphotransferase) domain 1 782 983 - -
Sed05g1847 1047 FunFam Leucine-rich repeat receptor-like protein kinase 429 618 - -
Sed05g1847 1047 Pfam Protein tyrosine and serine/threonine kinase 709 973 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1847 1047 FunFam Os05g0263100 protein 43 282 - -
Sed05g1847 1047 Pfam Leucine Rich Repeat 248 269 IPR001611 GO:0005515(InterPro)
Sed05g1847 1047 Pfam Leucine Rich Repeat 320 341 IPR001611 GO:0005515(InterPro)
Sed05g1847 1047 Pfam Leucine Rich Repeat 175 197 IPR001611 GO:0005515(InterPro)
Sed05g1847 1047 FunFam Leucine-rich repeat receptor-like protein kinase 675 781 - -
Sed05g1847 1047 Gene3D Phosphorylase Kinase; domain 1 672 781 - -
Sed05g1847 1047 Pfam Malectin domain 432 614 IPR021720 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1847 Sed-Chr5:31925212 Sed05g1849 Sed-Chr5:31925759 0.00E+00 dispersed
Sed05g1847 Sed-Chr5:31925212 Sed05g1848 Sed-Chr5:31925759 0.00E+00 tandem
Sed04g3505 Sed-Chr4:44518142 Sed05g1847 Sed-Chr5:31925212 4.10E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79180 PF07714 PK_Tyr_Ser-Thr 2.10E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1847 - - - 0.0