Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1848 ATGGCGTCTTCCCCTTTAGGTTTCATCTTTGCTTGTATCATTGTTTTGGGTGGAGCTCAGAATTCAAATCAGAACCCCATCACTGATCCTGATGAAGCAAGAGCTCTAAATTCCATATTTTCACAATGGGGTATATCGGCACCAGCAGGGGCATGGAATATAAGTGGCAATCTATGCAGTGGGAGGGCAGTCGACACTACTACCGCCATCGACAATGGTGGTACCCTTAATCCTTTTATAAAATGTGATTGCTCAGCCAACAACGGTGATACTTGCCACATTACTCAATTGTTTGTTTATGCACTAGATACGGGTGGTGTACTCCCATCGGAGCTATGGACATTAACTTCCCTCACCTATCTAAAGTTGGATCAGAATTTCTTAACTGGAACACTATCTGCATCAGTTGGTAATCTCACACAATTACAAACCTTGACCCTTGGCATCAATGCTTTATCTGGGGAACTTCCAAAGGAACTTGGATCTCTTACTAATCTGAAAATGTTAGGATTCGGGTCCAACCGTTTTTCTGGTTCCTTGCCACCAGAGCTCGGAAATCTTTCTATGTTAGAGGAACTATACATTGATAGCTCGGGAGTTTCTGGTGATATTCCTCAATCATTTTCAAGTCTAACAAACTTGCGAATCATATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGAGTTCATCGGAAGTTGGACAGGTCTCACAATTTTGAGGTTGCAAGGAAACTCCTTCTCAGGTCCCATACCATCCACATTTTCGAAATTGACATCTTTGATTGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTCGCATTCATCGGTAATATGAAATCTTTAACTGTCCTGGTGTTGAGAAATAGTAATATTTCAGGTCCAATTCCATCCAACATTGGAGAATTTCAAAGACTTGTCCACCTGGACTTGAGCTTCAACAGCTTGACAGGAGAGATTCCAAGCTCACTCTTCAATTTGGGTTCACTGTCACACTTGTTTCTTGGAAATAACAAGTTAAATGGGACCATACCTGTACAGAAGAGTATTTCCCTTCTGAATATAGACTTATCATATAATGATTTATCAGGGAACTTTCCTTCTTGGATCAACCAGCCAGACTTACAGCTAAATTTAGTTGCCAACAGCTTCAGAATTGATAGTTTTTCAAGTAGCGGTAGTTTGCCTTTTGGATTGGACTGTCTTCAACGCAACTTTCCTTGTAATCGAAATCTTCCTATATATTCTTATTTCGGGATCAAGTGTGGTGGCCCGGAAATAAGAAGTTCATCCGGGGTTACGTTTGAAAGGGAAAATGAGACACTCGGTCCGGCTACGTACTTTGTTACCGAGTCTAAAAGGTGGGCCGTTAGTAATACTGGATACTTTACCGGATCTAACAATCCTCAATACAAAGACAACGAATGGTCTCTCTCAAACACCTTTGTCGCAGAGCTTTTTCAAACACATCGACTATCTGCTTCATCATTGAGATACTATGGACTCGGGCTTCAGAATGGCAACTACACTGTAATCCTTCAGTTTGCAGAAATAGCATTCCCAAATTCAACAGCATGGCGAAACAGTGGGAGGCGTGTCTTTGATGTATATATCCAGGGAAATCGTGTCTTAGAGAATTTTGATATTAAAAAAAAGGCAGGTGGGCCATTCCTTGCTGTTATAGAAAAGTTTACGGCTGAAGTGACAGAAAACTTCCTGGAAATTCATCTTTTTTGGGCTGGGAAAGGTACCTGTTGCATACCTACCCAGGGTGCTTATGGACCCTCAGTTTCAGCCATCAGTGCTACTTCAGATTTTGAACCAACTGTTAGTAACATACCTCCAAGTACCAAGGAGAATAATACCCCCAAAAGTACTGAGGAGAATCACAAAACGGGCCTAACTGTAGGACTTGTTGTTGGCTTAGGATCTGTTCTGTTTCTGATTACTGGTGCAGTTTTCATTGTTTTCCAAAGGAAAAAGCCTCGTGCCTATGAAGATGAAGGTCTTCTCGGAGTAGATGCTAGACCGTACACATTTAGTTTTTCTGTATTAAGGGGTGCTACAAACGACTTTAGTTCATCCAACAAACTTGGTGAGGGAGGGTTTGGGCCTGTTTACAAGGGAACACTGAGTGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCGTCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGTTACAATATCTGCAGTGCAACATCGAAACCTTGTGAAACTATATGGATGTTGCATCGAGGCCGATAAACGTCTTCTTGTCTATGAGTTTCTTGAAAATAAGAGTCTTGACCAAGCACTATTTGAAAAAAGACATGTTATTATTGATTGGCCAACACGTTTCAACATATGCGTGGGTATAGCGAAAGGTCTCGCTTACCTACATGAGGAATCTAGACTTCGGATAGTGCACAGAGACGTAAAGGCCAGTAACATCCTGCTTGATGGTGATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACTCGGGTTGCTGGGACTATTGGCTATCTTGCACCTGAGTATGCCATGCTTGGCCACCTTACGGAGAAAGCTGATGTCTTTGGATTCGGTGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCTGATCCTAGCTTAGAGCAAGACAAAGTTTATCTTCTCCATTGGGCATGGCACCTCCATGAAAACAACCATAAACTTGAGATGGTGGACTCTGAATTATCCGAGTACAGCAAGGAGGATGTAGAAAGGGTGATTTCTATAGCTCTTCTGTGCACTCAAACATCCCCATCTCTTCGGCCATCGATGTCTCGCGTGGTGGCAATGCTGGCTGGAGACATGGAAGTGCCGGCTGTAACAACCAAACCAGGATACCTGACTGATTGGAATTTTGATGACATTACAAGCTTTATAGATGTTGATGATCTATCAACCGAAGAACCTGATGCCGGCCGTTATGCATCAACAAGTCTGAGTATTGTTCATGCAAATCGCTCGCCAACGAGAGATTCTGCACCAATGCTCCGTGCAGTATCAAGGCGGAGTATGTGA 3114 42.52 MASSPLGFIFACIIVLGGAQNSNQNPITDPDEARALNSIFSQWGISAPAGAWNISGNLCSGRAVDTTTAIDNGGTLNPFIKCDCSANNGDTCHITQLFVYALDTGGVLPSELWTLTSLTYLKLDQNFLTGTLSASVGNLTQLQTLTLGINALSGELPKELGSLTNLKMLGFGSNRFSGSLPPELGNLSMLEELYIDSSGVSGDIPQSFSSLTNLRIIWASDNEFTGRIPEFIGSWTGLTILRLQGNSFSGPIPSTFSKLTSLIELRIGDLSNGSSSLAFIGNMKSLTVLVLRNSNISGPIPSNIGEFQRLVHLDLSFNSLTGEIPSSLFNLGSLSHLFLGNNKLNGTIPVQKSISLLNIDLSYNDLSGNFPSWINQPDLQLNLVANSFRIDSFSSSGSLPFGLDCLQRNFPCNRNLPIYSYFGIKCGGPEIRSSSGVTFERENETLGPATYFVTESKRWAVSNTGYFTGSNNPQYKDNEWSLSNTFVAELFQTHRLSASSLRYYGLGLQNGNYTVILQFAEIAFPNSTAWRNSGRRVFDVYIQGNRVLENFDIKKKAGGPFLAVIEKFTAEVTENFLEIHLFWAGKGTCCIPTQGAYGPSVSAISATSDFEPTVSNIPPSTKENNTPKSTEENHKTGLTVGLVVGLGSVLFLITGAVFIVFQRKKPRAYEDEGLLGVDARPYTFSFSVLRGATNDFSSSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKSQFVAEIVTISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFEKRHVIIDWPTRFNICVGIAKGLAYLHEESRLRIVHRDVKASNILLDGDLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMLGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLHWAWHLHENNHKLEMVDSELSEYSKEDVERVISIALLCTQTSPSLRPSMSRVVAMLAGDMEVPAVTTKPGYLTDWNFDDITSFIDVDDLSTEEPDAGRYASTSLSIVHANRSPTRDSAPMLRAVSRRSM 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31925759 31938747 + Sed0000303.1 Sed05g1848 714474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1848 1037 CDD STKc_IRAK 702 964 - -
Sed05g1848 1037 Gene3D - 420 609 - -
Sed05g1848 1037 Gene3D Phosphorylase Kinase; domain 1 662 771 - -
Sed05g1848 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1848 1037 FunFam Leucine-rich repeat receptor-like protein kinase 419 608 - -
Sed05g1848 1037 SMART serkin_6 696 964 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1848 1037 FunFam Putative LRR receptor-like serine/threonine-protein kinase 273 396 - -
Sed05g1848 1037 FunFam Os05g0263100 protein 33 272 - -
Sed05g1848 1037 ProSiteProfiles Protein kinase domain profile. 696 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1848 1037 SUPERFAMILY Protein kinase-like (PK-like) 679 964 IPR011009 -
Sed05g1848 1037 Pfam Malectin domain 422 604 IPR021720 -
Sed05g1848 1037 Pfam Leucine Rich Repeat 310 331 IPR001611 GO:0005515(InterPro)
Sed05g1848 1037 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515(InterPro)
Sed05g1848 1037 Pfam Leucine Rich Repeat 238 259 IPR001611 GO:0005515(InterPro)
Sed05g1848 1037 SUPERFAMILY L domain-like 91 395 - -
Sed05g1848 1037 Gene3D Ribonuclease Inhibitor 273 386 IPR032675 -
Sed05g1848 1037 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 43 990 IPR051824 GO:0005886(PANTHER)
Sed05g1848 1037 Gene3D Transferase(Phosphotransferase) domain 1 772 973 - -
Sed05g1848 1037 FunFam Putative LRR receptor-like serine/threonine-protein kinase 772 976 - -
Sed05g1848 1037 MobiDBLite consensus disorder prediction 613 633 - -
Sed05g1848 1037 FunFam Leucine-rich repeat receptor-like protein kinase 665 771 - -
Sed05g1848 1037 Pfam Protein tyrosine and serine/threonine kinase 699 963 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1848 1037 Gene3D Ribonuclease Inhibitor 29 272 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3505 Sed-Chr4:44518142 Sed05g1848 Sed-Chr5:31925759 4.10E-07 dispersed
Sed05g1848 Sed-Chr5:31925759 Sed05g1850 Sed-Chr5:31943013 0.00E+00 dispersed
Sed05g1847 Sed-Chr5:31925212 Sed05g1848 Sed-Chr5:31925759 0.00E+00 tandem
Sed05g1848 Sed-Chr5:31925759 Sed05g1849 Sed-Chr5:31925759 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79181 PF07714 PK_Tyr_Ser-Thr 2.10E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1848 - - - 0.0