Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1849 ATGGCGTCTTCCCCTTTAGGTTTCATCTTTGCTTGTATCATTGTTTTGGGTGGAGCTCAGAATTCAAATCAGAACCCCATCACTGATCCTGATGAAGGGGCATGGAATATAAGTGGCAATCTATGCAGTGGGAGGGCAGTCGACACTACTACCGCCATCGACAATGGTGGTACCCTTAATCCTTTTATAAAATGTGATTGCTCAGCCAACAACGGTGATACTTGCCACATTACTCAATTGTTTGTTTATGCACTAGATACGGGTGGTGTACTCCCATCGGAGCTATGGACATTAACTTCCCTCACCTATCTAAAGTTGGATCAGAATTTCTTAACTGGAACACTATCTGCATCAGTTGGTAATCTCACACAATTACAAACCTTGACCCTTGGCATCAATGCTTTATCTGGGGAACTTCCAAAGGAACTTGGATCTCTTACTAATCTGAAAATGTTAGGATTCGGGTCCAACCGTTTTTCTGGTTCCTTGCCACCAGAGCTCGGAAATCTTTCTATGTTAGAGGAACTATACATTGATAGCTCGGGAGTTTCTGGTGATATTCCTCAATCATTTTCAAGTCTAACAAACTTGCGAATCATATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGAGTTCATCGGAAGTTGGACAGGTCTCACAATTTTGAGGTTGCAAGGAAACTCCTTCTCAGGTCCCATACCATCCACATTTTCGAAATTGACATCTTTGATTGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTCGCATTCATCGGTAATATGAAATCTTTAACTGTCCTGGTGTTGAGAAATAGTAATATTTCAGGTCCAATTCCATCCAACATTGGAGAATTTCAAAGACTTGTCCACCTGGACTTGAGCTTCAACAGCTTGACAGGAGAGATTCCAAGCTCACTCTTCAATTTGGGTTCACTGTCACACTTGTTTCTTGGAAATAACAAGTTAAATGGGACCATACCTGTACAGAAGAGTATTTCCCTTCTGAATATAGACTTATCATATAATGATTTATCAGGGAACTTTCCTTCTTGGATCAACCAGCCAGACTTACAGCTAAATTTAGTTGCCAACAGCTTCAGAATTGATAGTTTTTCAAGTAGCGGTAGTTTGCCTTTTGGATTGGACTGTCTTCAACGCAACTTTCCTTGTAATCGAAATCTTCCTATATATTCTTATTTCGGGATCAAGTGTGGTGGCCCGGAAATAAGAAGTTCATCCGGGGTTACGTTTGAAAGGGAAAATGAGACACTCGGTCCGGCTACGTACTTTGTTACCGAGTCTAAAAGGTGGGCCGTTAGTAATACTGGATACTTTACCGGATCTAACAATCCTCAATACAAAGACAACGAATGGTCTCTCTCAAACACCTTTGTCGCAGAGCTTTTTCAAACACATCGACTATCTGCTTCATCATTGAGATACTATGGACTCGGGCTTCAGAATGGCAACTACACTGTAATCCTTCAGTTTGCAGAAATAGCATTCCCAAATTCAACAGCATGGCGAAACAGTGGGAGGCGTGTCTTTGATGTATATATCCAGGGAAATCGTGTCTTAGAGAATTTTGATATTAAAAAAAAGGCAGGTGGGCCATTCCTTGCTGTTATAGAAAAGTTTACGGCTGAAGTGACAGAAAACTTCCTGGAAATTCATCTTTTTTGGGCTGGGAAAGGTACCTGTTGCATACCTACCCAGGGTGCTTATGGACCCTCAGTTTCAGCCATCAGTGCTACTTCAGATTTTGAACCAACTGTTAGTAACATACCTCCAAGTACCAAGGAGAATAATACCCCCAAAAGTACTGAGGAGAATCACAAAACGGGCCTAACTGTAGGACTTGTTGTTGGCTTAGGATCTGTTCTGTTTCTGATTACTGGTGCAGTTTTCATTGTTTTCCAAAGGAAAAAGCCTCGTGCCTATGAAGATGAAGGTCTTCTCGGAGTAGATGCTAGACCGTACACATTTAGTTTTTCTGTATTAAGGGGTGCTACAAACGACTTTAGTTCATCCAACAAACTTGGTGAGGGAGGGTTTGGGCCTGTTTACAAGGGAACACTGAGTGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCGTCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGTTACAATATCTGCAGTGCAACATCGAAACCTTGTGAAACTATATGGATGTTGCATCGAGGCCGATAAACGTCTTCTTGTCTATGAGTTTCTTGAAAATAAGAGTCTTGACCAAGCACTATTTGAAAAAAGACATGTTATTATTGATTGGCCAACACGTTTCAACATATGCGTGGGTATAGCGAAAGGTCTCGCTTACCTACATGAGGAATCTAGACTTCGGATAGTGCACAGAGACGTAAAGGCCAGTAACATCCTGCTTGATGGTGATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACTCGGGTTGCTGGGACTATTGGCTATCTTGCACCTGAGTATGCCATGCTTGGCCACCTTACGGAGAAAGCTGATGTCTTTGGATTCGGTGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCTGATCCTAGCTTAGAGCAAGACAAAGTTTATCTTCTCCATTGGGCATGGCACCTCCATGAAAACAACCATAAACTTGAGATGGTGGACTCTGAATTATCCGAGTACAGCAAGGAGGATGTAGAAAGGGTGATTTCTATAGCTCTTCTGTGCACTCAAACATCCCCATCTCTTCGGCCATCGATGTCTCGCGTGGTGGCAATGCTGGCTGGAGACATGGAAGTGCCGGCTGTAACAACCAAACCAGGATACCTGACTGATTGGAATTTTGATGACATTACAAGCTTTATAGATGTTGATGATCTATCAACCGAAGAACCTGATGCCGGCCGTTATGCATCAACAAGTCTGAGTATTGTTCATGCAAATCGCTCGCCAACGAGAGATTCTGCACCAATGCTCCGTGCAGTATCAAGGCGGAGTATGTGA 3063 42.51 MASSPLGFIFACIIVLGGAQNSNQNPITDPDEGAWNISGNLCSGRAVDTTTAIDNGGTLNPFIKCDCSANNGDTCHITQLFVYALDTGGVLPSELWTLTSLTYLKLDQNFLTGTLSASVGNLTQLQTLTLGINALSGELPKELGSLTNLKMLGFGSNRFSGSLPPELGNLSMLEELYIDSSGVSGDIPQSFSSLTNLRIIWASDNEFTGRIPEFIGSWTGLTILRLQGNSFSGPIPSTFSKLTSLIELRIGDLSNGSSSLAFIGNMKSLTVLVLRNSNISGPIPSNIGEFQRLVHLDLSFNSLTGEIPSSLFNLGSLSHLFLGNNKLNGTIPVQKSISLLNIDLSYNDLSGNFPSWINQPDLQLNLVANSFRIDSFSSSGSLPFGLDCLQRNFPCNRNLPIYSYFGIKCGGPEIRSSSGVTFERENETLGPATYFVTESKRWAVSNTGYFTGSNNPQYKDNEWSLSNTFVAELFQTHRLSASSLRYYGLGLQNGNYTVILQFAEIAFPNSTAWRNSGRRVFDVYIQGNRVLENFDIKKKAGGPFLAVIEKFTAEVTENFLEIHLFWAGKGTCCIPTQGAYGPSVSAISATSDFEPTVSNIPPSTKENNTPKSTEENHKTGLTVGLVVGLGSVLFLITGAVFIVFQRKKPRAYEDEGLLGVDARPYTFSFSVLRGATNDFSSSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKSQFVAEIVTISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFEKRHVIIDWPTRFNICVGIAKGLAYLHEESRLRIVHRDVKASNILLDGDLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMLGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLHWAWHLHENNHKLEMVDSELSEYSKEDVERVISIALLCTQTSPSLRPSMSRVVAMLAGDMEVPAVTTKPGYLTDWNFDDITSFIDVDDLSTEEPDAGRYASTSLSIVHANRSPTRDSAPMLRAVSRRSM 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31925759 31938898 + Sed0000303.2 Sed05g1849 714475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1849 1020 FunFam Putative LRR receptor-like serine/threonine-protein kinase 256 379 - -
Sed05g1849 1020 Gene3D Transferase(Phosphotransferase) domain 1 755 956 - -
Sed05g1849 1020 Pfam Leucine Rich Repeat 148 170 IPR001611 GO:0005515(InterPro)
Sed05g1849 1020 Pfam Leucine Rich Repeat 221 242 IPR001611 GO:0005515(InterPro)
Sed05g1849 1020 Pfam Leucine Rich Repeat 293 314 IPR001611 GO:0005515(InterPro)
Sed05g1849 1020 Gene3D Ribonuclease Inhibitor 74 256 IPR032675 -
Sed05g1849 1020 Gene3D Ribonuclease Inhibitor 257 394 IPR032675 -
Sed05g1849 1020 ProSiteProfiles Protein kinase domain profile. 679 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1849 1020 FunFam Putative LRR receptor-like serine/threonine-protein kinase 755 959 - -
Sed05g1849 1020 Gene3D - 403 592 - -
Sed05g1849 1020 FunFam Leucine-rich repeat receptor-like protein kinase 648 754 - -
Sed05g1849 1020 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 28 973 IPR051824 GO:0005886(PANTHER)
Sed05g1849 1020 MobiDBLite consensus disorder prediction 596 616 - -
Sed05g1849 1020 Gene3D Phosphorylase Kinase; domain 1 645 754 - -
Sed05g1849 1020 CDD STKc_IRAK 685 947 - -
Sed05g1849 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1849 1020 SUPERFAMILY L domain-like 74 378 - -
Sed05g1849 1020 FunFam Leucine-rich repeat receptor-like protein kinase 402 591 - -
Sed05g1849 1020 Pfam Protein tyrosine and serine/threonine kinase 682 946 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1849 1020 SUPERFAMILY Protein kinase-like (PK-like) 662 947 IPR011009 -
Sed05g1849 1020 FunFam Os05g0256100 protein 25 255 - -
Sed05g1849 1020 Pfam Malectin domain 405 587 IPR021720 -
Sed05g1849 1020 SMART serkin_6 679 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1847 Sed-Chr5:31925212 Sed05g1849 Sed-Chr5:31925759 0.00E+00 dispersed
Sed05g1849 Sed-Chr5:31925759 Sed05g1851 Sed-Chr5:31943013 3.00E-282 dispersed
Sed05g1848 Sed-Chr5:31925759 Sed05g1849 Sed-Chr5:31925759 0.00E+00 tandem
Sed05g1849 Sed-Chr5:31925759 Sed05g1850 Sed-Chr5:31943013 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79182 PF07714 PK_Tyr_Ser-Thr 2.00E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1849 - - - 0.0