Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1850 ATGGCTTCTTCCCCTTTAGGTTTCATGTTTGGTGTTTGTGCTTTTATTGCTTCTTGCATCATTGTTTTGGGTGAAGCTCAGAATTCAACTCAGTACCCCACCACTGATCCTGATGAAGCAAGAGCTCTAAATTCCATATTTGCGCATTGGGGTATATTGGCGCTAGCGGGGGCGTGGAATATAAGTGGCAATCTATGCAGTGGGTGGGCAGTCAACTCTACTACCCGCGTCGACAGTAAAGGAAACTTCAATCCTCTTATAAAATGCAAGTGCTCAGCCATGACTTGCCACATTACTCAAATGCTTGTTTATGCACTAGATACTGGTGGTATACTCCCATCAGAGCTATGGACATTAACTTCCCTCACCTTTCTGAAGTTGGATCAAAATTTCTTAACTGGAACACTATCTCCATCTGTTGGTAATCTCAAACAATTACAATTCTTGAGCCTTGGCACTAATGCATTATCTGGGGAACTTCCAAAGGAACTTGGATCCCTTACTAATCTGAGAGTGTTGGCATTCGGGTCCAACAATTTCTCTGGTTCCTTGCCACCAGAGCTTGGAAATCTTTATATGTTAAGGGAACTATTCATTGATAGCTCTGGAGTTTCTGGTGATATTCCTCAATCATTTTCAAGTCTAACAAACTTGTGGACCCTATGGGCATCCGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGTAGTTGGACAAGTCTTTCAACTTTGAGGTTGCAAGGAAACTCTTTCTCAGGTCCCATACCATCCACATTTTCAAACTTGACATCTTTGTATGAGTTGAGAATAGGTGATTTATCCAATGGTAGCTCTTCTCTCACATTCATCAGTAATATGACATCTCTAACTATCCTTGTGTTGAGAAATAGTAATATTTCAGGTCCAATTCCATCCAACATTGGAGAATTGCGAAGTCTTGCCGTGCTGGACTTGAGCTTCAACAACTTGACTGGAGAGATTCCAAGCTCGCTCTTCAATTTGGGTTCATTGACTCACTTGTTTCTTGGAAATAACAAGTTAAAGGGGGCCATGCCCGCACAGAAGAGTAATTCCCTTCTGAATATAGATTTGTCGTATAATGATTTATCAGGGAGCTTTCCTTCTTGGATCAACCAGCCAAACTTACAACTAAATTTAGTTGCCAACAGCTTCAGAATTGATAGTTTTTCAAGTAGCGGTAGTTTGCCTTCTGGACTGGACTGTCTTCAACGCAACTTTCCTTGTAATCGAAATCCTCCGATATATTCTAATTTCGGGATCAAGTGTGGTGGTCCGCAGATAAGAAGTTCATCGGGAGTTTTGTTTGAAAGGGAAAATGAGACTCTCGGTCCAGCTACGTACTTTGTTACTGAGTCTAAAAGGTGGGCCGTTAGTAATACTGGATACTTTATCGGGCCCAACAATCATCAATACAAAGGCAACGAATGGTCAAACACCGTTATCGCAGAGCTTTTTCAGACACAGCGACTATCTGCTTCATCATTGAGATACTATGGACTAGGCCTTGAGAATGGCAATTACACTGTCATCCTTGAGTTTGCTGAAATAGCTTTCCCAAATTCAAAAGCATGGCAAAACACTGGAAGGCGCGTCTTTGATATACATATCCAGGGAAGTCGTGTCTTACAGAATTTTAATATTAAAAGGGAGGCAGGTGGGTCATTCCTTGCTGTTATAAGAAACTTTACGGCTGAAGTTACTGAAAACTTCCTGGAAATTCATCTTTTTTGGGCTGGAAAAGGTACTTGCTGCATTCCTATTCAGGATGGTTTACAAAGCACTTATGGACCCTCTGTTTCAGCCATCAGTGCTACCCCAAATTTTGAACCAACTGTCAGTAACTTACCTCCAAGTACCCAGGAGCATAATTCCCCCAAAAGTAACAAGGAGAATAATACCCCCAGAAGTACTAAGGAGAATAACAGAACGGGCCTAACTGTAGGACTTTTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGCGCAGTTTTCGTTGTTTTGCAGAGAAGGAAAAAGCGTCGTGCCTATGAAGATGAAGTGCTTCTCGGAGTAGATGCAAGACCGTACACATTTAGTTTTTCTGAACTAAGGGGTGCTACAAACGACTTTAATTCATCCAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTACAAGGGAACACTGAGTGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTCGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGTTACAATATCTGCAGTGCAACATCGTAACCTTGTCAAACTATATGGATGTTGCATCGAGGCTGATAAACGTCTCCTTGTCTATGAGTTTCTTGAAAATAAGAGTCTTGACCAAGCACTATTTGAAAAAAGACATTTGATTATTGATTGGCCAACACGTTTCAACATATGCGTGGGTATAGCAAAAGGTCTCACTTACCTACATGAGGAATCGAGACTTCGCATAGTGCACAGAGATGTAAAGGCCAGTAACATCCTGCTTGATGGTGATCTGTTTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACCAAAAGACTCACATAAGTACTCGGGTTGCTGGGACTATTGGTTATCTTGCACCTGAGTACGCCTTGCGTGGCCACCTTACGGAGAAGGTTGATGTCTTTGGATTCGGCATTCTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGATCCAAGCTTAGAGCAAGACAAAGTTTATCTTCTCGAATGGGCATGGTACCTCCATGAAAACAACCATAAACTTGAGATGGTGGACTCTGAGTTATCCGAGTACAGCAAGGAGGAAGTAAAAAGAGTGATTGATATAGCTCTTCTGTGCACTCAAACATCCCCATCTCTTCGGCCCTCGATGTCTCGTGTGGGGGCAATGCTGGCTGGAGACATGGAAGTGCCCGTTGTAACAACCAAACCAGGATACCTGACAGATTGGAAATTTGATGACATTACAAGCTGTATAGATGATGCATCAACTAAGCAACCTAATACTGGCAGTTATGCATCGACAAGTTTGAGTATTGTTTATTCAAATTGCTCGCTTACGAGTGATTCTGCACCAATGCTCCATGAAGTATCAAGGGAGAGTAGGTGA 3156 42.11 MASSPLGFMFGVCAFIASCIIVLGEAQNSTQYPTTDPDEARALNSIFAHWGILALAGAWNISGNLCSGWAVNSTTRVDSKGNFNPLIKCKCSAMTCHITQMLVYALDTGGILPSELWTLTSLTFLKLDQNFLTGTLSPSVGNLKQLQFLSLGTNALSGELPKELGSLTNLRVLAFGSNNFSGSLPPELGNLYMLRELFIDSSGVSGDIPQSFSSLTNLWTLWASDNEFTGRIPDFIGSWTSLSTLRLQGNSFSGPIPSTFSNLTSLYELRIGDLSNGSSSLTFISNMTSLTILVLRNSNISGPIPSNIGELRSLAVLDLSFNNLTGEIPSSLFNLGSLTHLFLGNNKLKGAMPAQKSNSLLNIDLSYNDLSGSFPSWINQPNLQLNLVANSFRIDSFSSSGSLPSGLDCLQRNFPCNRNPPIYSNFGIKCGGPQIRSSSGVLFERENETLGPATYFVTESKRWAVSNTGYFIGPNNHQYKGNEWSNTVIAELFQTQRLSASSLRYYGLGLENGNYTVILEFAEIAFPNSKAWQNTGRRVFDIHIQGSRVLQNFNIKREAGGSFLAVIRNFTAEVTENFLEIHLFWAGKGTCCIPIQDGLQSTYGPSVSAISATPNFEPTVSNLPPSTQEHNSPKSNKENNTPRSTKENNRTGLTVGLFVGLGSVFFLIIGAVFVVLQRRKKRRAYEDEVLLGVDARPYTFSFSELRGATNDFNSSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKSQFVAEIVTISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFEKRHLIIDWPTRFNICVGIAKGLTYLHEESRLRIVHRDVKASNILLDGDLFPKISDFGLAKLYDDQKTHISTRVAGTIGYLAPEYALRGHLTEKVDVFGFGILALEIVSGRPNSDPSLEQDKVYLLEWAWYLHENNHKLEMVDSELSEYSKEEVKRVIDIALLCTQTSPSLRPSMSRVGAMLAGDMEVPVVTTKPGYLTDWKFDDITSCIDDASTKQPNTGSYASTSLSIVYSNCSLTSDSAPMLHEVSRESR 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31943013 31953900 + Sed0005947.1 Sed05g1850 714476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1850 1051 FunFam Putative LRR receptor-like serine/threonine-protein kinase 277 400 - -
Sed05g1850 1051 CDD STKc_IRAK 718 980 - -
Sed05g1850 1051 Gene3D Transferase(Phosphotransferase) domain 1 788 987 - -
Sed05g1850 1051 SUPERFAMILY L domain-like 97 399 - -
Sed05g1850 1051 Gene3D - 425 613 - -
Sed05g1850 1051 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515(InterPro)
Sed05g1850 1051 Pfam Leucine Rich Repeat 241 263 IPR001611 GO:0005515(InterPro)
Sed05g1850 1051 Gene3D Phosphorylase Kinase; domain 1 673 787 - -
Sed05g1850 1051 Pfam Malectin domain 426 610 IPR021720 -
Sed05g1850 1051 SUPERFAMILY Protein kinase-like (PK-like) 696 1012 IPR011009 -
Sed05g1850 1051 FunFam Leucine-rich repeat receptor-like protein kinase 681 787 - -
Sed05g1850 1051 Gene3D Ribonuclease Inhibitor 278 414 IPR032675 -
Sed05g1850 1051 Gene3D Ribonuclease Inhibitor 101 277 IPR032675 -
Sed05g1850 1051 FunFam Leucine-rich repeat receptor-like protein kinase 423 614 - -
Sed05g1850 1051 FunFam Putative LRR receptor-like serine/threonine-protein kinase 788 992 - -
Sed05g1850 1051 MobiDBLite consensus disorder prediction 618 639 - -
Sed05g1850 1051 MobiDBLite consensus disorder prediction 618 649 - -
Sed05g1850 1051 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 50 1006 IPR051824 GO:0005886(PANTHER)
Sed05g1850 1051 Pfam Leucine rich repeat 289 348 IPR001611 GO:0005515(InterPro)
Sed05g1850 1051 SMART serkin_6 712 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1850 1051 ProSiteProfiles Protein kinase domain profile. 712 989 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1850 1051 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1850 1051 SMART LRR_typ_2 119 143 IPR003591 -
Sed05g1850 1051 SMART LRR_typ_2 311 335 IPR003591 -
Sed05g1850 1051 SMART LRR_typ_2 167 191 IPR003591 -
Sed05g1850 1051 Pfam Protein tyrosine and serine/threonine kinase 715 977 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1850 1051 FunFam Os05g0256100 protein 41 276 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1848 Sed-Chr5:31925759 Sed05g1850 Sed-Chr5:31943013 0.00E+00 dispersed
Sed05g1850 Sed-Chr5:31943013 Sed13g0631 Sed-Chr13:4306822 1.70E-142 dispersed
Sed05g1849 Sed-Chr5:31925759 Sed05g1850 Sed-Chr5:31943013 0.00E+00 tandem
Sed05g1850 Sed-Chr5:31943013 Sed05g1851 Sed-Chr5:31943013 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79183 PF00069 Pkinase 8.50E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1850 - - - 0.0