Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1854 ATGGCAGCAGAGATGATGAACGGGAGCTGCTGCAAAAAGGGTGGCGGCCCATCGCCCTGCGCTGCGTGCAAGCTTCTGCGGCGACGGTGCGGTCCCGACTGCGTTTTTGCGCCTTATTTCCCAGCCGATCAGCCCCACAAATTCTCCAGTGTTCATAAGGTGTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTACCCGAGCAACAACGGGACGATGCAGTAAGTTCAATGATATATGAGGCAAATGCGAGGATTCGAGATCCTGTTTACGGGTGCGTGGGAACAATATCATGTCTACAACGACAAGTAGATGCACTACAACAACAATTGGCGATGACACAAGCCCAACTACTTCACATGAAATTGGGCCAATTTTCTTCAACATCACAATCATCATCTACCGATAACGTTATCCCTTTGGCACCCAATATGAACGTTGGCGAATCTACATCTTTGTGGTCTTGCTAG 474 48.73 MAAEMMNGSCCKKGGGPSPCAACKLLRRRCGPDCVFAPYFPADQPHKFSSVHKVFGASNVSKLLQELPEQQRDDAVSSMIYEANARIRDPVYGCVGTISCLQRQVDALQQQLAMTQAQLLHMKLGQFSSTSQSSSTDNVIPLAPNMNVGESTSLWSC 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31967644 31971370 - Sed0027593.1 Sed05g1854 714480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1854 157 Coils Coil 98 118 - -
Sed05g1854 157 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
Sed05g1854 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 127 - -
Sed05g1854 157 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1931 Sed-Chr1:14379149 Sed05g1854 Sed-Chr5:31967644 4.50E-45 dispersed
Sed05g1854 Sed-Chr5:31967644 Sed07g2592 Sed-Chr7:41488810 1.10E-42 dispersed
Sed01g0750 Sed-Chr1:5548781 Sed05g1854 Sed-Chr5:31967644 6.40E-41 wgd
Sed05g1854 Sed-Chr5:31967644 Sed05g3295 Sed-Chr5:42296810 7.20E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38554 PF03195 LOB 1.10E-43 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1854 - - - 0.0