Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1854 ATGGCAGCAGAGATGATGAACGGGAGCTGCTGCAAAAAGGGTGGCGGCCCATCGCCCTGCGCTGCGTGCAAGCTTCTGCGGCGACGGTGCGGTCCCGACTGCGTTTTTGCGCCTTATTTCCCAGCCGATCAGCCCCACAAATTCTCCAGTGTTCATAAGGTGTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTACCCGAGCAACAACGGGACGATGCAGTAAGTTCAATGATATATGAGGCAAATGCGAGGATTCGAGATCCTGTTTACGGGTGCGTGGGAACAATATCATGTCTACAACGACAAGTAGATGCACTACAACAACAATTGGCGATGACACAAGCCCAACTACTTCACATGAAATTGGGCCAATTTTCTTCAACATCACAATCATCATCTACCGATAACGTTATCCCTTTGGCACCCAATATGAACGTTGGCGAATCTACATCTTTGTGGTCTTGCTAG 474 48.73 MAAEMMNGSCCKKGGGPSPCAACKLLRRRCGPDCVFAPYFPADQPHKFSSVHKVFGASNVSKLLQELPEQQRDDAVSSMIYEANARIRDPVYGCVGTISCLQRQVDALQQQLAMTQAQLLHMKLGQFSSTSQSSSTDNVIPLAPNMNVGESTSLWSC 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31967644 31971370 - Sed0027593.1 Sed05g1854 714480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1854 157 Coils Coil 98 118 - -
Sed05g1854 157 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
Sed05g1854 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 127 - -
Sed05g1854 157 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1854 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1931 Sed-Chr1:14379149 Sed05g1854 Sed-Chr5:31967644 4.50E-45 dispersed
Sed05g1854 Sed-Chr5:31967644 Sed07g2592 Sed-Chr7:41488810 1.10E-42 dispersed
Sed01g0750 Sed-Chr1:5548781 Sed05g1854 Sed-Chr5:31967644 6.40E-41 wgd
Sed05g1854 Sed-Chr5:31967644 Sed05g3295 Sed-Chr5:42296810 7.20E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1042 . . . . . . . . . . . . . . Sed05g1854 Cpe04g00856 . Bhi05g02025 Tan02g0063 Cmetu01g1532 Lac12g0891 Hepe02g0029 . . Cla02g01814 Cam02g1919 Cec02g1940 Cco02g1984 Clacu02g1901 Cmu02g1848 Cre02g2163 . . . . . Csa07g01185 . . Blo15g00606 . . . . . . . Sed01g0750 . . . . . . . . Bhi10g00963 Tan05g0608 Cmetu11g1961 . Hepe08g0630 . . . . . . . . . . Csa06g01169 Chy11g01024 Cme01g01534
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g2755 . 1 221 AS2 family AT1G65620 65.6 3.3e-71 265.8
Sed05g3367 . 2 209 AS2 family AT1G65620 53.8 8.6e-48 188.0
Sed01g0080 . 1 112 AS2 family AT1G65620 80.4 1.9e-47 186.8
Sed12g2463 . 3 175 AS2 family AT1G65620 56.1 3.1e-45 179.5
Sed08g0088 . 3 113 AS2 family AT1G65620 73.9 2.0e-44 176.8
Sed06g0520 . 21 191 AS2 family AT1G65620 51.5 1.7e-43 173.7
Sed06g0521 . 3 173 AS2 family AT1G65620 51.5 1.7e-43 173.7
Sed03g0119 . 1 118 AS2 family AT1G65620 66.1 2.7e-41 166.4
Sed03g0120 . 1 118 AS2 family AT1G65620 66.1 2.7e-41 166.4
Sed08g2530 . 1 115 AS2 family AT1G65620 70.4 6.6e-40 161.8
Sed08g1405 . 3 113 AS2 family AT1G65620 65.8 2.5e-39 159.8
Sed01g0080 . 4 120 AS2 family AT5G66870 84.6 2.2e-53 207.2
Sed05g3367 . 1 140 AS2 family AT5G66870 72.1 2.5e-49 193.7
Sed03g2755 . 4 112 AS2 family AT5G66870 77.1 1.5e-43 174.5
Sed12g2463 . 1 113 AS2 family AT5G66870 68.1 2.3e-39 160.6
Sed08g0088 . 1 113 AS2 family AT5G66870 68.1 3.9e-39 159.8
Sed06g0520 . 25 131 AS2 family AT5G66870 68.2 8.8e-39 158.7
Sed06g0521 . 7 113 AS2 family AT5G66870 68.2 8.8e-39 158.7
Sed03g0119 . 7 114 AS2 family AT5G66870 65.7 4.4e-38 156.4
Sed03g0120 . 7 114 AS2 family AT5G66870 65.7 4.4e-38 156.4
Sed08g2530 . 16 114 AS2 family AT5G66870 71.7 8.2e-37 152.1
Sed03g2755 . 6 112 AS2 family AT2G23660 69.2 1.3e-39 161.4
Sed12g2463 . 8 113 AS2 family AT2G23660 64.2 1.9e-38 157.5
Sed08g0088 . 8 113 AS2 family AT2G23660 64.2 3.3e-38 156.8
Sed06g0520 . 25 141 AS2 family AT2G23660 58.1 6.3e-37 152.5
Sed06g0521 . 7 123 AS2 family AT2G23660 58.1 6.3e-37 152.5
Sed06g0520 . 22 132 AS2 family AT3G27650 83.8 1.3e-51 200.3
Sed06g0521 . 4 114 AS2 family AT3G27650 83.8 1.3e-51 200.3
Sed03g0119 . 8 129 AS2 family AT3G27650 75.6 7.4e-50 194.5
Sed03g0120 . 8 129 AS2 family AT3G27650 75.6 7.4e-50 194.5
Sed12g2463 . 4 114 AS2 family AT3G27650 76.6 1.0e-46 184.1
Sed08g0088 . 4 114 AS2 family AT3G27650 77.5 1.0e-46 184.1
Sed08g1405 . 4 114 AS2 family AT3G27650 75.7 2.2e-46 183.0
Sed03g2755 . 3 112 AS2 family AT3G27650 68.2 1.3e-41 167.2
Sed08g2530 . 16 117 AS2 family AT3G27650 76.5 1.6e-41 166.8
Sed05g3367 . 4 112 AS2 family AT3G27650 67.9 9.0e-40 161.0
Sed01g0080 . 3 114 AS2 family AT3G27650 64.3 1.2e-39 160.6
Sed12g2463 . 3 127 AS2 family AT5G63090 84.0 3.3e-57 219.2
Sed08g0088 . 3 131 AS2 family AT5G63090 80.0 9.5e-57 217.6
Sed06g0520 . 20 143 AS2 family AT5G63090 76.6 1.0e-50 197.6
Sed06g0521 . 2 125 AS2 family AT5G63090 76.6 1.0e-50 197.6
Sed03g0119 . 1 114 AS2 family AT5G63090 83.3 6.6e-50 194.9
Sed03g0120 . 1 114 AS2 family AT5G63090 83.3 6.6e-50 194.9
Sed08g2530 . 1 121 AS2 family AT5G63090 80.2 5.6e-49 191.8
Sed03g2755 . 3 122 AS2 family AT5G63090 71.7 1.3e-45 180.6
Sed08g1405 . 2 119 AS2 family AT5G63090 74.6 1.7e-45 180.3
Sed01g0080 . 2 112 AS2 family AT5G63090 71.2 8.6e-42 167.9
Sed05g3367 . 2 119 AS2 family AT5G63090 67.2 1.1e-41 167.5
Sed05g1854 . 18 142 AS2 family AT5G63090 61.6 3.1e-39 159.5
Sed05g3295 . 12 115 AS2 family AT5G63090 68.3 4.4e-38 155.6
Sed01g1931 . 16 156 AS2 family AT5G63090 55.3 2.9e-37 152.9
Sed07g2592 . 4 106 AS2 family AT5G63090 69.9 3.8e-37 152.5
Sed07g2592 . 3 135 AS2 family AT2G30130 80.5 3.5e-54 209.1
Sed05g3295 . 12 123 AS2 family AT2G30130 75.0 3.0e-45 179.5
Sed01g1931 . 10 131 AS2 family AT2G30130 66.4 5.6e-44 175.3
Sed05g3791 . 6 135 AS2 family AT2G30130 61.8 3.1e-42 169.5
Sed05g1854 . 14 120 AS2 family AT2G30130 72.9 1.5e-41 167.2
Sed01g0981 . 10 124 AS2 family AT2G30130 64.3 1.3e-37 154.1
Sed11g2121 . 40 142 AS2 family AT2G30130 70.9 1.7e-37 153.7
Sed04g2946 . 42 153 AS2 family AT2G30130 67.0 3.9e-37 152.5
Sed01g0750 . 12 102 AS2 family AT2G30130 79.1 3.9e-37 152.5
Sed08g0088 . 8 127 AS2 family AT2G30130 60.8 3.9e-37 152.5
Sed12g2463 . 8 111 AS2 family AT2G30130 66.3 6.6e-37 151.8
Sed05g2881 . 36 144 AS2 family AT2G30130 68.8 1.1e-36 151.0
Sed03g2755 . 7 109 AS2 family AT2G30130 67.0 1.5e-36 150.6
Sed01g0982 . 41 146 AS2 family AT2G30130 64.2 1.9e-36 150.2
Sed05g3295 . 1 169 AS2 family AT1G31320 73.6 6.7e-65 244.6
Sed01g1931 . 2 173 AS2 family AT1G31320 71.8 4.4e-64 241.9
Sed01g0750 . 1 163 AS2 family AT1G31320 64.2 1.2e-50 197.2
Sed05g1854 . 12 157 AS2 family AT1G31320 54.4 3.5e-45 179.1
Sed07g2592 . 2 122 AS2 family AT1G31320 68.3 6.5e-44 174.9
Sed11g2121 . 40 149 AS2 family AT1G31320 65.5 1.2e-37 154.1
Sed01g0981 . 14 127 AS2 family AT1G31320 59.6 4.5e-37 152.1
Sed01g0982 . 41 150 AS2 family AT1G31320 64.5 5.9e-37 151.8
Sed05g2881 . 36 146 AS2 family AT1G31320 67.6 1.0e-36 151.0
Sed12g2463 . 9 125 AS2 family AT1G31320 61.5 1.3e-36 150.6
Sed04g2946 . 51 160 AS2 family AT1G31320 63.6 1.7e-36 150.2
Sed05g2881 . 33 149 AS2 family AT2G28500 82.1 2.0e-48 190.3
Sed01g0982 . 39 156 AS2 family AT2G28500 77.1 5.9e-48 188.7
Sed01g0981 . 15 180 AS2 family AT2G28500 54.7 6.7e-44 175.3
Sed07g2403 . 38 156 AS2 family AT2G28500 72.3 1.1e-41 167.9
Sed04g2762 . 46 138 AS2 family AT2G28500 84.9 2.4e-41 166.8
Sed07g2592 . 5 113 AS2 family AT2G28500 67.0 2.7e-37 153.3
Sed05g3295 . 11 120 AS2 family AT2G28500 65.5 1.4e-36 151.0
Sed01g0982 . 1 156 AS2 family AT1G07900 60.9 1.1e-44 177.6
Sed07g2403 . 36 193 AS2 family AT1G07900 69.9 1.9e-44 176.8
Sed05g2881 . 33 149 AS2 family AT1G07900 74.4 2.3e-42 169.9
Sed04g2762 . 39 138 AS2 family AT1G07900 82.0 1.2e-41 167.5
Sed01g0981 . 15 132 AS2 family AT1G07900 65.3 5.4e-39 158.7
Sed05g3295 . 1 169 AS2 family AT1G16530 58.6 9.4e-48 187.6
Sed01g1931 . 15 121 AS2 family AT1G16530 69.4 1.9e-40 163.3
Sed05g1854 . 18 123 AS2 family AT1G16530 70.1 2.1e-39 159.8
Sed07g2592 . 5 110 AS2 family AT1G16530 68.2 5.7e-37 151.8
Sed04g2946 . 1 165 AS2 family AT2G30340 68.7 5.0e-59 225.7
Sed11g2121 . 25 149 AS2 family AT2G30340 81.6 5.6e-58 222.2
Sed05g3295 . 9 120 AS2 family AT2G30340 60.7 1.6e-36 151.0
Sed04g2946 . 37 187 AS2 family AT2G40470 77.5 7.5e-60 228.0
Sed11g2121 . 24 169 AS2 family AT2G40470 77.6 1.3e-59 227.3
Sed05g3295 . 9 137 AS2 family AT2G40470 59.3 2.1e-41 166.8
Sed01g1931 . 17 146 AS2 family AT2G40470 57.3 4.0e-37 152.5
Sed05g1854 . 18 123 AS2 family AT2G40470 64.2 2.0e-36 150.2
Sed03g0369 . 1 126 AS2 family AT3G11090 72.2 1.3e-44 177.2
Sed01g4320 . 1 113 AS2 family AT2G42440 74.3 4.2e-44 176.0
Sed07g0525 . 5 142 AS2 family AT2G42440 64.3 1.6e-43 174.1
Sed05g0101 . 1 95 AS2 family AT2G42440 84.2 1.0e-42 171.4
Sed04g2174 . 7 126 AS2 family AT2G42440 61.5 4.4e-38 156.0
Sed05g0100 . 4 115 AS2 family AT2G42440 66.1 1.3e-37 154.5
Sed01g4321 . 19 132 AS2 family AT2G42440 64.9 6.4e-37 152.1
Sed09g0109 . 21 133 AS2 family AT2G42440 60.7 8.4e-37 151.8
Sed01g4320 . 4 113 AS2 family AT3G58190 79.1 1.4e-46 184.1
Sed07g0525 . 4 125 AS2 family AT3G58190 73.4 1.8e-46 183.7
Sed05g0101 . 4 95 AS2 family AT3G58190 89.1 9.8e-45 177.9
Sed04g2174 . 6 126 AS2 family AT3G58190 65.0 3.3e-40 162.9
Sed05g0100 . 3 115 AS2 family AT3G58190 68.1 4.2e-40 162.5
Sed09g0109 . 21 123 AS2 family AT3G58190 71.8 7.2e-40 161.8
Sed01g4321 . 20 132 AS2 family AT3G58190 66.4 1.0e-38 157.9
Sed02g1589 . 19 133 AS2 family AT3G58190 62.6 7.5e-37 151.8
Sed09g0110 . 16 114 AS2 family AT3G58190 68.7 2.2e-36 150.2
Sed02g0841 . 36 153 AS2 family AT3G58190 61.0 2.2e-36 150.2
Sed05g0101 . 1 145 AS2 family AT2G31310 58.5 2.2e-37 153.3
Sed05g0100 . 6 213 AS2 family AT2G42430 52.1 3.5e-51 199.5
Sed01g4321 . 25 222 AS2 family AT2G42430 51.3 1.7e-50 197.2
Sed04g2174 . 2 113 AS2 family AT2G42430 68.1 1.8e-39 160.6
Sed05g0101 . 3 163 AS2 family AT2G42430 54.0 6.9e-39 158.7
Sed01g4320 . 3 94 AS2 family AT2G42430 79.3 1.5e-38 157.5
Sed02g1589 . 6 121 AS2 family AT2G42430 65.5 4.5e-38 156.0
Sed09g0109 . 21 123 AS2 family AT2G42430 70.9 1.0e-37 154.8
Sed02g0841 . 35 151 AS2 family AT2G42430 64.1 1.7e-37 154.1
Sed09g0109 . 6 211 AS2 family AT4G00220 62.3 1.0e-60 231.1
Sed04g2174 . 2 209 AS2 family AT4G00220 53.2 1.8e-49 193.7
Sed02g1589 . 19 181 AS2 family AT4G00220 58.2 1.6e-45 180.6
Sed09g0109 . 21 226 AS2 family AT2G45420 63.8 2.9e-67 253.1
Sed04g2174 . 12 207 AS2 family AT2G45420 62.4 3.0e-64 243.0
Sed02g1589 . 19 174 AS2 family AT2G45420 61.3 1.2e-49 194.5
Sed09g0110 . 16 125 AS2 family AT2G45420 70.9 1.4e-42 171.0
Sed02g0841 . 36 142 AS2 family AT2G45420 73.8 6.0e-41 165.6
Sed01g4321 . 26 128 AS2 family AT2G45420 74.8 6.7e-40 162.2
Sed07g0525 . 8 114 AS2 family AT2G45420 67.3 2.5e-39 160.2
Sed05g0100 . 9 111 AS2 family AT2G45420 69.9 5.6e-39 159.1
Sed01g4320 . 7 96 AS2 family AT2G45420 76.7 9.0e-37 151.8
Sed05g0101 . 7 95 AS2 family AT2G45420 77.5 2.0e-36 150.6
Sed02g0841 . 36 149 AS2 family AT3G03760 84.2 1.3e-49 194.5
Sed09g0109 . 21 122 AS2 family AT3G03760 81.4 1.8e-40 164.1
Sed04g2174 . 12 113 AS2 family AT3G03760 79.4 6.9e-40 162.2
Sed02g1589 . 11 125 AS2 family AT3G03760 67.0 9.4e-37 151.8
Sed09g0110 . 16 209 AS2 family AT4G00210 52.4 1.1e-46 184.5
Sed04g2174 . 6 122 AS2 family AT4G00210 71.4 1.4e-43 174.1
Sed09g0109 . 20 132 AS2 family AT4G00210 71.7 2.4e-43 173.3
Sed02g1589 . 18 122 AS2 family AT4G00210 67.6 1.4e-38 157.5
Sed02g0841 . 36 137 AS2 family AT4G00210 71.6 5.8e-37 152.1
Sed07g0525 . 8 112 AS2 family AT4G00210 64.8 9.9e-37 151.4
Sed09g0110 . 13 212 AS2 family AT2G45410 54.1 5.2e-50 195.3
Sed02g1589 . 12 138 AS2 family AT2G45410 65.6 3.3e-44 176.0
Sed09g0109 . 20 126 AS2 family AT2G45410 71.0 6.1e-43 171.8
Sed07g2503 . 7 116 AS2 family AT5G06080 71.8 8.8e-44 174.5
Sed05g2663 . 1 225 AS2 family AT1G68510 53.1 2.0e-59 226.9
Sed12g2071 . 1 163 AS2 family AT1G68510 59.5 9.8e-51 198.0
Sed07g2092 . 1 169 AS2 family AT1G68510 57.7 4.5e-48 189.1
Sed10g0704 . 1 104 AS2 family AT1G68510 65.4 1.3e-39 161.0
Sed14g0907 . 1 104 AS2 family AT1G68510 62.5 4.3e-38 156.0
Sed05g2663 . 1 259 AS2 family AT1G67100 57.7 6.3e-74 275.0
Sed12g2071 . 1 134 AS2 family AT1G67100 71.3 1.7e-55 213.8
Sed07g2092 . 1 131 AS2 family AT1G67100 65.5 2.2e-47 186.8
Sed10g0704 . 1 110 AS2 family AT1G67100 69.1 6.1e-45 178.7
Sed14g0907 . 1 110 AS2 family AT1G67100 65.5 9.8e-43 171.4
Sed01g2708 . 1 110 AS2 family AT1G67100 63.6 1.5e-38 157.5
Sed05g2663 . 1 244 AS2 family AT3G02550 64.3 1.1e-77 287.7
Sed12g2071 . 1 148 AS2 family AT3G02550 66.0 3.9e-56 216.1
Sed07g2092 . 1 134 AS2 family AT3G02550 64.0 1.4e-45 181.0
Sed10g0704 . 1 104 AS2 family AT3G02550 68.3 3.3e-39 159.8
Sed10g0704 . 1 220 AS2 family AT5G67420 59.2 5.0e-69 258.8
Sed14g0907 . 1 182 AS2 family AT5G67420 56.6 1.4e-58 224.2
Sed05g2663 . 3 112 AS2 family AT5G67420 68.2 1.1e-44 177.9
Sed01g2708 . 1 117 AS2 family AT5G67420 67.5 7.3e-44 175.3
Sed12g2071 . 3 112 AS2 family AT5G67420 60.0 1.6e-38 157.5
Sed07g2092 . 1 104 AS2 family AT5G67420 63.5 6.0e-38 155.6
Sed10g0704 . 1 219 AS2 family AT3G49940 59.1 1.1e-68 257.7
Sed14g0907 . 1 211 AS2 family AT3G49940 53.3 1.9e-57 220.3
Sed01g2708 . 1 120 AS2 family AT3G49940 69.2 1.9e-44 177.2
Sed07g2092 . 1 104 AS2 family AT3G49940 66.3 3.4e-38 156.4
Sed10g0704 . 1 220 AS2 family AT4G37540 56.5 1.1e-65 247.7
Sed14g0907 . 1 212 AS2 family AT4G37540 54.1 1.0e-58 224.6
Sed01g2708 . 1 138 AS2 family AT4G37540 63.8 5.7e-46 182.2
Sed05g2663 . 3 113 AS2 family AT4G37540 65.8 8.5e-42 168.3
Sed07g2092 . 1 125 AS2 family AT4G37540 56.8 1.1e-36 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000955 1 3 2 2 2 3 4 3 3 3 3 3 3 4 3 3 3 2 3 3 3 2 3 3 3 3 3 3 3 2 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38554 PF03195 LOB 1.10E-43 No_clan Sed TF