Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1856 ATGTCCTCCTTTTCTCTCTCTCTCTCTCTTAGCATAAAAACCAAACACTCCCCTTTCTCCAATTTACATCTCTCAATTTCTACTCTCATGGCTGTTGAAGCCCGCAATCTCAATCTCTTCCGACCTCAACTCCTACCACCAAACAGAGGATTTGGGAATCCGATGGAAGGTGATGCGAATATGTACGCCAATCAAATGGGTTATGGAGTTCCATTACTGTCCGGAACCACCACCGCCGCTCCGACTTACAATTCCATGTTCGCCGATTCCGATTCTCCCAAAATTGCCATGAAATCGGACAGCGGCGTGACCTATAACTGCAACCTTCCTATGCACAGAAAGCGCTCTAGAGATTGTATGGACATGAACCCATTTGCGTCGGCGTACCCTTGCAACAATCCAATTACTACCCCTAAGTCTTGTGGATCTTTCTCGTTTCTTGGCGATGATATTTCCCTCCAGATTCAGCAACAACAACTTGATATCGACCGGTTGATTTCTCTACATTTGGAGAACGTGAGATTAGAAATGGAGGAGAAACGGAAGAGACAAGCCCGGAGGATAATGGAAGCTATAGAGGCGGGAACAATAAAGAGACTAAAAGCCAAAGAGGAAGAGATCGCAAAAATGGGCAAACTAAACTGGGCACTACAAGAAAGAGTGAAATCATTATGCATCGAAAATCAACTATGGCGCGACATGGCACAGTCAAACGAAGCAGCCGTGAATGCCCTAAGAGCCAATTTAGAACAAGTCCTGTGCGAAGCGAACGAAGACGAGACCGAGGCGACCGCAGCCGCGAGGACATGGGTGGACGAGGACGTGGAGTCGAGCTGCAGCAGCAACGGGGCCGAAAACAATAACGGAATGTGGTGCAAAGGGTGCGGGAAAGAGGAATCGAGTGTGCTGTTATTGCCGTGCAGGCATCTATGTGTGTGTACCCTATGTGGGTCATTGGTATCAATCTGCCCCGTTTGTAAATGCACAAAGAACGCTACTGTACAAGTAAACTTGGCTTAG 1020 47.55 MSSFSLSLSLSIKTKHSPFSNLHLSISTLMAVEARNLNLFRPQLLPPNRGFGNPMEGDANMYANQMGYGVPLLSGTTTAAPTYNSMFADSDSPKIAMKSDSGVTYNCNLPMHRKRSRDCMDMNPFASAYPCNNPITTPKSCGSFSFLGDDISLQIQQQQLDIDRLISLHLENVRLEMEEKRKRQARRIMEAIEAGTIKRLKAKEEEIAKMGKLNWALQERVKSLCIENQLWRDMAQSNEAAVNALRANLEQVLCEANEDETEATAAARTWVDEDVESSCSSNGAENNNGMWCKGCGKEESSVLLLPCRHLCVCTLCGSLVSICPVCKCTKNATVQVNLA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32009812 32012127 - Sed0026558.1 Sed05g1856 714482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1856 339 Gene3D Death Domain, Fas 186 300 IPR011029 -
Sed05g1856 339 Gene3D - 301 335 - -
Sed05g1856 339 CDD mRING-HC-C3HC5_CGRF1-like 292 327 - -
Sed05g1856 339 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 98 338 - GO:0004842(PANTHER)|GO:0043067(PANTHER)
Sed05g1856 339 Pfam Zinc finger, C3HC4 type (RING finger) 291 329 - -
Sed05g1856 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Sed05g1856 339 Coils Coil 242 262 - -
Sed05g1856 339 Gene3D - 156 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1856 K19042 - - csv:101212862 360.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3850 Sed-Chr4:46865868 Sed05g1856 Sed-Chr5:32009812 7.50E-23 dispersed
Sed05g1856 Sed-Chr5:32009812 Sed08g1961 Sed-Chr8:34070403 3.60E-46 dispersed
Sed01g0742 Sed-Chr1:5473607 Sed05g1856 Sed-Chr5:32009812 2.50E-48 wgd
Sed04g3499 Sed-Chr4:44447570 Sed05g1856 Sed-Chr5:32009812 1.50E-99 wgd
Sed05g1856 Sed-Chr5:32009812 Sed05g3283 Sed-Chr5:42205630 9.40E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g968 . . . . Bpe09g00292 . . . . . . Cma09g00748 . Car09g00656 Sed05g1856 . . Bhi05g02031 Tan02g0066 Cmetu01g2586 Lac12g0881 Hepe02g0032 . . Cla11g01588 . . . . . . . . . Cone15ag0980 Lsi04g01867 . . Cme07g00766 . . . . . . . . . . Cmo09g00740 . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1009 . . . . . . . . . . . . . . Sed05g1856 Cpe04g00854 . Bhi05g02031 Tan02g0066 Cmetu01g2586 Lac12g0881 Hepe02g0032 . . Cla02g01808 Cam02g1911 Cec02g1931 Cco02g1975 Clacu02g1893 Cmu02g1838 Cre02g2155 . . . . . Csa07g01181 . Cme11g01580 Blo15g00602 . . . . . . Bma12g00622 Sed01g0743 . . . . . . . . Bhi10g00978 Tan05g0620 Cmetu11g1616 . Hepe08g0623 . . . . . . . . . . Csa06g01179 Chy11g01014 Cme01g01539
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001336 2 3 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 1 75