Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1861 ATGTCATCTGGAAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTATCCCTATGGGTTTTGATCTGCTTATGTGTTGGCGCATTTATTGTTTTGATTCTTGGCATCTTATCTGTATGGGTGATGTTTAGAAGAAAAACAAGGAGATCCCCAGAAAACATCTCTGTTTCTCAAATACCTAATGTCTCAAAGGATATTAAGGTGGACAGAATAGCCGCTCAATCTGCTCGCCACAATCATCTTGAGAGTCTTTATCATTCCATTCATGATAAATCAAGTGACAAGAACTCGGAGAAGATGAACGGTCATTTGGGTATGAGCAAGTCTAGTGATCATGATAACATAAGCCAATGCAGCTCCAATTATTATCATGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCATATGGAGGACTTGTGACTGCCTCTCCTCTTGTTGGCCTGCCTGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACGAACCGTTTCTCTGCCGACAATGTGCTTGGTGAAGGAGGTTATGGAGTTGTCTATAAAGGTAGACTGATAAATGGAACGGAGGTTGCAGTGAAGAAACTTCTCAATAATATGGGCCAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTAAGACACAAGAACCTTGTACGGCTTCTGGGCTATTGCATTGAAGGAGTTCATAGGATGCTGGTTTATGAATATGTGAACAATGGGAACTTAGAACAGTGGTTACATGGGGCTATGCGCCAACATGGTATCCTTACTTGGGAGGCTCGGATGAAGGTGCTTCTTGGGACTGCCAAGGCGTTAGCGTATTTACATGAAGCAATTGAACCAAAGGTTGTCCATAGAGACATAAAATCAAGCAATATCCTAATCGACGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCAGGAGAGAGTTATATCACAACTAGAGTAATGGGAACATTTGGCTATGTGGCACCCGAGTATGCAAACACTGGCTTGTTAAACGAGAAAAGTGACATTTACAGCTTTGGTGTCCTCCTTCTAGAAGCAATTACAGGAAGAGACCCTGTGGACAATGGCCGTCCTGGTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTAGGCACAAGGCGAGCCGAGGAAGTTATAGACCCAAATCTTGAAACTAAACCCGGTACACGAGCATTGAAACGCGCCCTTCTGATCGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACTCAAGTTGTTAGGATGATTGAAGCTGATGACTACCCATCACGTGAGGATCGGAGAAGCCAAAAGAGCAGCACAGCAAACTCGGAGATCGAATCCACGAAAGAGATCTCCAGTCAAGCCGAAGTCGGAAGTAAACCAGGGGAATCACAAAGCAGATCTGAAAGCGCATGA 1530 43.14 MSSGSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENISVSQIPNVSKDIKVDRIAAQSARHNHLESLYHSIHDKSSDKNSEKMNGHLGMSKSSDHDNISQCSSNYYHERVFSSHSGEEGSSGTVRKQSSMSYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFSADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNMGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGILTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESYITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDNGRPGNEVNLVEWLKVMVGTRRAEEVIDPNLETKPGTRALKRALLIALRCVDPEADKRPKMTQVVRMIEADDYPSREDRRSQKSSTANSEIESTKEISSQAEVGSKPGESQSRSESA 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32038219 32042721 + Sed0006096.2 Sed05g1861 714487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1861 509 MobiDBLite consensus disorder prediction 478 509 - -
Sed05g1861 509 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524(InterPro)
Sed05g1861 509 MobiDBLite consensus disorder prediction 94 119 - -
Sed05g1861 509 PANTHER OS01G0323000 PROTEIN 6 490 IPR052232 -
Sed05g1861 509 Gene3D Phosphorylase Kinase; domain 1 171 264 - -
Sed05g1861 509 Pfam Protein kinase domain 192 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1861 509 Gene3D Transferase(Phosphotransferase) domain 1 265 479 - -
Sed05g1861 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1861 509 FunFam Putative receptor-like serine/threonine-protein kinase 265 475 - -
Sed05g1861 509 SUPERFAMILY Protein kinase-like (PK-like) 173 465 IPR011009 -
Sed05g1861 509 Coils Coil 209 229 - -
Sed05g1861 509 SMART serkin_6 189 460 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1861 509 MobiDBLite consensus disorder prediction 460 509 - -
Sed05g1861 509 FunFam Putative receptor-like protein kinase 171 264 - -
Sed05g1861 509 CDD STKc_IRAK 195 461 - -
Sed05g1861 509 MobiDBLite consensus disorder prediction 460 477 - -
Sed05g1861 509 ProSiteProfiles Protein kinase domain profile. 189 447 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1861 509 MobiDBLite consensus disorder prediction 103 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2943 Sed-Chr3:46426726 Sed05g1861 Sed-Chr5:32038219 7.40E-148 dispersed
Sed05g1861 Sed-Chr5:32038219 Sed05g3277 Sed-Chr5:42172537 3.20E-208 dispersed
Sed05g1860 Sed-Chr5:32038219 Sed05g1861 Sed-Chr5:32038219 7.00E-288 tandem
Sed05g1861 Sed-Chr5:32038219 Sed05g1862 Sed-Chr5:32038219 7.00E-288 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79186 PF00069 Pkinase 3.10E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1861 - - - 0.0