Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1861 | ATGTCATCTGGAAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTATCCCTATGGGTTTTGATCTGCTTATGTGTTGGCGCATTTATTGTTTTGATTCTTGGCATCTTATCTGTATGGGTGATGTTTAGAAGAAAAACAAGGAGATCCCCAGAAAACATCTCTGTTTCTCAAATACCTAATGTCTCAAAGGATATTAAGGTGGACAGAATAGCCGCTCAATCTGCTCGCCACAATCATCTTGAGAGTCTTTATCATTCCATTCATGATAAATCAAGTGACAAGAACTCGGAGAAGATGAACGGTCATTTGGGTATGAGCAAGTCTAGTGATCATGATAACATAAGCCAATGCAGCTCCAATTATTATCATGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCATATGGAGGACTTGTGACTGCCTCTCCTCTTGTTGGCCTGCCTGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACGAACCGTTTCTCTGCCGACAATGTGCTTGGTGAAGGAGGTTATGGAGTTGTCTATAAAGGTAGACTGATAAATGGAACGGAGGTTGCAGTGAAGAAACTTCTCAATAATATGGGCCAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTAAGACACAAGAACCTTGTACGGCTTCTGGGCTATTGCATTGAAGGAGTTCATAGGATGCTGGTTTATGAATATGTGAACAATGGGAACTTAGAACAGTGGTTACATGGGGCTATGCGCCAACATGGTATCCTTACTTGGGAGGCTCGGATGAAGGTGCTTCTTGGGACTGCCAAGGCGTTAGCGTATTTACATGAAGCAATTGAACCAAAGGTTGTCCATAGAGACATAAAATCAAGCAATATCCTAATCGACGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCAGGAGAGAGTTATATCACAACTAGAGTAATGGGAACATTTGGCTATGTGGCACCCGAGTATGCAAACACTGGCTTGTTAAACGAGAAAAGTGACATTTACAGCTTTGGTGTCCTCCTTCTAGAAGCAATTACAGGAAGAGACCCTGTGGACAATGGCCGTCCTGGTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTAGGCACAAGGCGAGCCGAGGAAGTTATAGACCCAAATCTTGAAACTAAACCCGGTACACGAGCATTGAAACGCGCCCTTCTGATCGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACTCAAGTTGTTAGGATGATTGAAGCTGATGACTACCCATCACGTGAGGATCGGAGAAGCCAAAAGAGCAGCACAGCAAACTCGGAGATCGAATCCACGAAAGAGATCTCCAGTCAAGCCGAAGTCGGAAGTAAACCAGGGGAATCACAAAGCAGATCTGAAAGCGCATGA | 1530 | 43.14 | MSSGSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENISVSQIPNVSKDIKVDRIAAQSARHNHLESLYHSIHDKSSDKNSEKMNGHLGMSKSSDHDNISQCSSNYYHERVFSSHSGEEGSSGTVRKQSSMSYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFSADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNMGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGILTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESYITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDNGRPGNEVNLVEWLKVMVGTRRAEEVIDPNLETKPGTRALKRALLIALRCVDPEADKRPKMTQVVRMIEADDYPSREDRRSQKSSTANSEIESTKEISSQAEVGSKPGESQSRSESA | 509 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32038219 | 32042721 | + | Sed0006096.2 | Sed05g1861 | 714487 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1861 | 509 | MobiDBLite | consensus disorder prediction | 478 | 509 | - | - | |
Sed05g1861 | 509 | ProSitePatterns | Protein kinases ATP-binding region signature. | 195 | 218 | IPR017441 | GO:0005524(InterPro) | |
Sed05g1861 | 509 | MobiDBLite | consensus disorder prediction | 94 | 119 | - | - | |
Sed05g1861 | 509 | PANTHER | OS01G0323000 PROTEIN | 6 | 490 | IPR052232 | - | |
Sed05g1861 | 509 | Gene3D | Phosphorylase Kinase; domain 1 | 171 | 264 | - | - | |
Sed05g1861 | 509 | Pfam | Protein kinase domain | 192 | 458 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g1861 | 509 | Gene3D | Transferase(Phosphotransferase) domain 1 | 265 | 479 | - | - | |
Sed05g1861 | 509 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 311 | 323 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g1861 | 509 | FunFam | Putative receptor-like serine/threonine-protein kinase | 265 | 475 | - | - | |
Sed05g1861 | 509 | SUPERFAMILY | Protein kinase-like (PK-like) | 173 | 465 | IPR011009 | - | |
Sed05g1861 | 509 | Coils | Coil | 209 | 229 | - | - | |
Sed05g1861 | 509 | SMART | serkin_6 | 189 | 460 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g1861 | 509 | MobiDBLite | consensus disorder prediction | 460 | 509 | - | - | |
Sed05g1861 | 509 | FunFam | Putative receptor-like protein kinase | 171 | 264 | - | - | |
Sed05g1861 | 509 | CDD | STKc_IRAK | 195 | 461 | - | - | |
Sed05g1861 | 509 | MobiDBLite | consensus disorder prediction | 460 | 477 | - | - | |
Sed05g1861 | 509 | ProSiteProfiles | Protein kinase domain profile. | 189 | 447 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g1861 | 509 | MobiDBLite | consensus disorder prediction | 103 | 119 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2943 | Sed-Chr3:46426726 | Sed05g1861 | Sed-Chr5:32038219 | 7.40E-148 | dispersed | |
Sed05g1861 | Sed-Chr5:32038219 | Sed05g3277 | Sed-Chr5:42172537 | 3.20E-208 | dispersed | |
Sed05g1860 | Sed-Chr5:32038219 | Sed05g1861 | Sed-Chr5:32038219 | 7.00E-288 | tandem | |
Sed05g1861 | Sed-Chr5:32038219 | Sed05g1862 | Sed-Chr5:32038219 | 7.00E-288 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79186 | PF00069 | Pkinase | 3.10E-48 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1861 | - | - | - | 0.0 |