Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1863 ATGTCGAATGATGAAGGCAAGAATGTATACCAGCAGTATGATCCGTTTCTGTACAACCAGCTGGACATCAACCGTTCGATCTTCCCACAACAGCCGTTGGATCCGGCCTTCATGAGCTTCACGAACTTCTTCGACACGTCGTTGGACTACAACAGCCTGTCGAGGGCGTTCGACGTGTCGTGCTCTTCAACGGAAGTGATTTCGGCGGTGGACGACATGTCGAACAGGAATAAGGCAAGCTTAAAGCAATCGTCGTCGGCGTCGTCTTTGTCGAATGAGGCTGCAGCGGAAGAAGATTCCGTCAAGAGCATGAAAGAGGAGACAAAAGAGTGCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACATAGGAAAAAAGAAAGAGAAACGGGTTCGGGAGCCACGATTTGCTTTCTTGACTAAAAGTGAGATTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAAGCAGTAAAAAATAGTCCTTACCCCAGAAGTTACTACAGATGCACGAGTCAAAAATGCCTAGTAAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTGGTCATAACTACATATGAAGGCCAACACAACCACCACTGCCCCGCTACACTCCGAGGCCACTCGGCAGGATTAATATCTTCTCCGTTTTACGCATCGACATCGGCAACAACAGCCTCCACCGGCCCTACCCTGCCCCACGAACTCTTCTCGCATTTGCTACCGATCACAAACAGCCAGACCGACCCGGCATCGACATTGTACCAAAATCTAAACCTCCAAGACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTAAAAAATAA 858 45.8 MSNDEGKNVYQQYDPFLYNQLDINRSIFPQQPLDPAFMSFTNFFDTSLDYNSLSRAFDVSCSSTEVISAVDDMSNRNKASLKQSSSASSLSNEAAAEEDSVKSMKEETKECENKDEEKSKKQNIGKKKEKRVREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCLVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGLISSPFYASTSATTASTGPTLPHELFSHLLPITNSQTDPASTLYQNLNLQDLQMPDHYGLLQDLFTKK 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32047521 32050028 - Sed0018295.1 Sed05g1863 714489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1863 285 Gene3D WRKY domain 133 209 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1863 285 SMART WRKY_cls 148 207 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1863 285 FunFam WRKY transcription factor 57 134 208 - -
Sed05g1863 285 Pfam WRKY DNA -binding domain 149 206 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1863 285 MobiDBLite consensus disorder prediction 80 129 - -
Sed05g1863 285 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 215 IPR044810 GO:0003700(InterPro)
Sed05g1863 285 Coils Coil 87 124 - -
Sed05g1863 285 MobiDBLite consensus disorder prediction 80 96 - -
Sed05g1863 285 MobiDBLite consensus disorder prediction 98 129 - -
Sed05g1863 285 SUPERFAMILY WRKY DNA-binding domain 141 208 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1863 285 ProSiteProfiles WRKY domain profile. 143 208 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3474 Sed-Chr4:44383313 Sed05g1863 Sed-Chr5:32047521 3.80E-54 dispersed
Sed05g1863 Sed-Chr5:32047521 Sed14g1557 Sed-Chr14:23766438 6.80E-38 dispersed
Sed13g0795 Sed-Chr13:5897206 Sed05g1863 Sed-Chr5:32047521 2.50E-13 dispersed
Sed03g2583 Sed-Chr3:41279511 Sed05g1863 Sed-Chr5:32047521 3.80E-37 transposed
Sed01g0735 Sed-Chr1:5413448 Sed05g1863 Sed-Chr5:32047521 1.40E-46 wgd
Sed04g3473 Sed-Chr4:44383313 Sed05g1863 Sed-Chr5:32047521 6.50E-105 wgd
Sed05g1863 Sed-Chr5:32047521 Sed05g3276 Sed-Chr5:42167882 9.70E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38556 PF03106 WRKY 2.40E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1863 - - - 0.0