Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1874 ATGCAGACAGATCACCGTAAGAAGAATTCTGCAGAATTGGACTTTTTCTCTGAATATGGGGATGCCAACAGATTCAAAATCCAGGAAGTTATTGGGAAGGGGAGTTATGGCGTGGTTTGTTCAGCTGTCGACACTCTCACTAATGAAAAAGTGGCAATCAAGAAGATAAATGATATTTTTGATCATGTATCTGATGCTGCTCGTATTCTTCGTGAGATAAAGCTGCTCAGACTTCTACGTCATCCCGATATCGTTGAGATCAAACACATTATGTTACCACCTTCTCGCAGGGGGTTTAAAGATATCTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCCAATGACGATTTAACAAAAGAGCACTACCAATTTTTCCTTTACCAGCTACTCCGTGCACTGAAATTTATTCACACAGCAAGTGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATATGTGATTTTGGATTGGCTAGAGTTGCTTTTAGTGACACCCCGACAACAATATTTTGGACGGACTATGTTGCTACTAGATGGTATAGGGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTTCTGCCATTGACATTTGGAGTATTGGCTGCATATTTGCTGAAGTACTGACCGGAAAACCACTTTTTCCCGGTAAAAATGTTGTTCATCAGCTCGACTTGATGACAGATCTCCTTGGAACGCCATCATTAGATACTATTTCTCGGGTAAGAAATGAGAAGGCCAGAAGGTATTTAACTACTATGAGGAAGAAGCAGCCCATACCCTTTTCACAGAAGTTCCGAAATGTGGACCCTCTAGCCCTGCAATTACTGCAACGGTTGCTCGCCTTTGATCCAAAGGATCGACCTACTGCTGAAGAGGCATTAGCAGATCCTTACTTTAAGGGGCTGGCGAAAGTTGAGAGGGAACCTTCTTGCCCGCCAATCTCGAAGGTGGAGTTCGAATTCGAGAGGAGAAAAGTCACAAAGGACGACATCCGTGAGCTGATATTCCGGGAGATACTTGAATACCATCCTCAACTGCTGAAAGACTACTTAAATGGGATTGAGAGATCAAATTTTCTTTTTCCAAGTGCACTCGATCAGTTCAAAAAACAATTTGCGCATCTTGAAGAGAATGGAGGCAAAAATGGACCAGTTTATCCTCTGGAAAGAAAGCATGCATCTCTTCCTAGGTCTTCAGTGCAGTCGAATACCATTCCTCCTAAAGCTACATCGAATATTGTTCCGTTAAAAGATCGATATCCACCACCAGGGTCGTATGGCAACCAGCAATACAGAGATCCAGCAGCACAGAGGATAGCTGCTACTCAAGCCAAGCCTGGAAGAATTTCGGGTCCGGTCATGCCGTACGATAGTGGAAGTATCGCTAAAGATGCTTACGACCCTAGAATCTTAATTAGAAGTGCCCTCCCTTCTCATGCTATCCATCCAACATATTATTACCAGCAATGTCGTGGCCAAAATGATGAGAGATCAGCAACAGGGGCTGAGAAAGACACTTCCTTACAATGCAAACAAGCCCCTCAATGTGGAATGACAGCCAAATTAGCAGCAGATACAGCAGCTACTAGTGCTTTCTCAAATCCTTTTTTTATGGCACGTGTAGGCGTACACAAGCCCGGAAACAATGACTGTGCTGCACGTTTGCAAGCAAACACGCAATATGATGCTGGATCCATTGCTGCTGCAACTTTCACGACTCATAGAAACACAGGCACGATCGAGTATGGTATGACGGGAATGTATTAG 1818 43.07 MQTDHRKKNSAELDFFSEYGDANRFKIQEVIGKGSYGVVCSAVDTLTNEKVAIKKINDIFDHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKFIHTASVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTSAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTTMRKKQPIPFSQKFRNVDPLALQLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCPPISKVEFEFERRKVTKDDIRELIFREILEYHPQLLKDYLNGIERSNFLFPSALDQFKKQFAHLEENGGKNGPVYPLERKHASLPRSSVQSNTIPPKATSNIVPLKDRYPPPGSYGNQQYRDPAAQRIAATQAKPGRISGPVMPYDSGSIAKDAYDPRILIRSALPSHAIHPTYYYQQCRGQNDERSATGAEKDTSLQCKQAPQCGMTAKLAADTAATSAFSNPFFMARVGVHKPGNNDCAARLQANTQYDAGSIAAATFTTHRNTGTIEYGMTGMY 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32155700 32160841 + Sed0008768.1 Sed05g1874 714500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1874 605 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1874 605 MobiDBLite consensus disorder prediction 412 427 - -
Sed05g1874 605 FunFam Mitogen-activated protein kinase 111 339 - -
Sed05g1874 605 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
Sed05g1874 605 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1874 605 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Sed05g1874 605 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Sed05g1874 605 MobiDBLite consensus disorder prediction 397 447 - -
Sed05g1874 605 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1874 605 Pfam Protein kinase domain 26 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1874 605 FunFam Mitogen-activated protein kinase 16 118 - -
Sed05g1874 605 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 23 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed05g1874 605 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Sed05g1874 605 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1874 Sed-Chr5:32155700 Sed05g3270 Sed-Chr5:42114259 4.10E-242 dispersed
Sed01g0732 Sed-Chr1:5380466 Sed05g1874 Sed-Chr5:32155700 1.70E-243 wgd
Sed05g1874 Sed-Chr5:32155700 Sed05g3269 Sed-Chr5:42114259 4.10E-242 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79188 PF00069 Pkinase 4.10E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1874 - - - 0.0