Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g1879 | ATGGCTCAAGAATTTAGCTTCTTTTTGGTGCCATTGTTCTCTGTTTTAGCTGCAATATTGTTCATAAAGTTCATCATTCTTCTCTTCATAAGCAACAATGGAACCAAGAATCTCCCACCAGGCCAAATGGGTGTCCCTTGGATTGGCGAAACAATGGATTTTTACAAAGCTCAACGCAAAAACAGATTGTTCGAGGAGTTTGTCGAGCCTCGAGTGGCTAAATTTGGCAAAATCTTCAAAACAAGCTTGATGGGTTCACCAACTGTGGTTGTATATGGAGCTGAAGCCAACAGGTTTTTCTTGTCCAATGAGTTCAAGTTGGTGGTCAGCTCGTGGCCATCGTGCTCGGTTCAGCTGATGGGCGAACAATGCATAATGCAGAAGCAAGGTGAAAGCCATCGATGCGTGCGAGGGCTCATTTCCGCGAGCCTTGCTGGTTCGAGCCTTGAGGCTATGGTGCCTAAACTCTGTGGTTCAATTCAGCTTCATTTGGACACCCACTGGCTTGGCCGTGGGACTATTGGTTTGTTTCACTCGGCCAAAGTCTTGACGTTTACGGTCGTGTTTGAGTGTTTGATGGGTATTAAAGTGGAGCCGGATGTGCTGAGGATGTTCGAGAGAGTTTTGGAAGGAGTTTTTGCTCTACCATTCAGATTTCCAGGTTCGAAGTTTTCGCGAGCGAAGAAGGCGAGGTTAGAGATAGAGAAAATGTTGAGGAAAGTGGTGAGAGAGAAGAGGAGGAGAATTGAAGGAGGAAAGGTAGAAGAAGAAGCAGAAGATGGATTATTGCTTTCAAGGATGGTGACAGCAATGATCAGAGGGGAAATTAGTGAAGAAGAAGTCATAGACAACGTGGTTTTGCTAGTTTTTGCAGCTCACGATACAACCTCCTTTGCAATTGCCATGACTTTCAAAATGTTGGCTCACCATTCCAATTGCTACTCACTTCTTCTTCAAGAACACAGTGACATCATGAGAAGTAAGGGATCAGATCAGAGTTTGACAATGGAAGATATAAAGAAGATGAAGTATACATGGCAGGTAGCTCGTGAGAGCATAAGATTGTTTCCCCCTGTTTTTGGTTCTTTCAGGAAAGCAATTACAGACATTGAATATAATGGATTCTTCATTCCTAAAGGATGGAAGATCTTGTGGACGATGTATGGAACGCATTATGAGGAAGAGTATTTTGAAGATCCATTGAGCTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCCCAGTATGTATATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTAGCCAAGTTGAACATCCTCATCTTCATACACTTTGTTGTAACACGTTATGATTGGAGTTTAGTACACCCAGATGAGCCAATCGTTATGGATCCTCTCCCTTTCCCTTCTCATGGAATGCCAATAAAGATTTCTCCAAAATCACAAGTTTGTCCCAATGTACAGAAAATGTAA | 1467 | 43.29 | MAQEFSFFLVPLFSVLAAILFIKFIILLFISNNGTKNLPPGQMGVPWIGETMDFYKAQRKNRLFEEFVEPRVAKFGKIFKTSLMGSPTVVVYGAEANRFFLSNEFKLVVSSWPSCSVQLMGEQCIMQKQGESHRCVRGLISASLAGSSLEAMVPKLCGSIQLHLDTHWLGRGTIGLFHSAKVLTFTVVFECLMGIKVEPDVLRMFERVLEGVFALPFRFPGSKFSRAKKARLEIEKMLRKVVREKRRRIEGGKVEEEAEDGLLLSRMVTAMIRGEISEEEVIDNVVLLVFAAHDTTSFAIAMTFKMLAHHSNCYSLLLQEHSDIMRSKGSDQSLTMEDIKKMKYTWQVARESIRLFPPVFGSFRKAITDIEYNGFFIPKGWKILWTMYGTHYEEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHFVVTRYDWSLVHPDEPIVMDPLPFPSHGMPIKISPKSQVCPNVQKM | 488 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 32195073 | 32197940 | - | Sed0015129.1 | Sed05g1879 | 714505 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g1879 | 488 | Pfam | Cytochrome P450 | 39 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | Coils | Coil | 227 | 247 | - | - | |
| Sed05g1879 | 488 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 420 | 429 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed05g1879 | 488 | PANTHER | CYTOCHROME P450 26 | 37 | 458 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Sed05g1879 | 488 | PRINTS | P450 superfamily signature | 418 | 427 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | PRINTS | P450 superfamily signature | 291 | 308 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | PRINTS | P450 superfamily signature | 347 | 358 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | PRINTS | P450 superfamily signature | 427 | 438 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | FunFam | Taxadiene 5-alpha hydroxylase | 30 | 478 | - | - | |
| Sed05g1879 | 488 | PRINTS | E-class P450 group I signature | 427 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | PRINTS | E-class P450 group I signature | 417 | 427 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | PRINTS | E-class P450 group I signature | 386 | 410 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | PRINTS | E-class P450 group I signature | 72 | 91 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | PRINTS | E-class P450 group I signature | 280 | 297 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | CDD | CYP90-like | 71 | 477 | - | - | |
| Sed05g1879 | 488 | Gene3D | Cytochrome P450 | 30 | 478 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g1879 | 488 | SUPERFAMILY | Cytochrome P450 | 36 | 477 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed04g3201 | Sed-Chr4:42674509 | Sed05g1879 | Sed-Chr5:32195073 | 1.50E-87 | dispersed | |
| Sed05g1879 | Sed-Chr5:32195073 | Sed08g1181 | Sed-Chr8:24461141 | 2.20E-76 | dispersed | |
| Sed05g1879 | Sed-Chr5:32195073 | Sed07g2699 | Sed-Chr7:42282257 | 1.30E-92 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g1879 | - | - | - | 0.0 |