Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1886 ATGGCGGCGAAATCCAAGGTCCACATCCTGTTTTCAATTCTACTCCTCCACTTGGCAACCGCAGCCAAGCTTCATCGAGACGAAGTGAAAGTGTTGAAGGAGATCGAGAAGAAGATAGGGAAAAGCGACTGGGATTTCGCCCTAGATCCTTGCACCGGACACGGGAACTGGCGCCTTCTTAACGGCAAAAAAGGCTTCGAAAGCTCCGTCACCTGCGATTGCTCTTTCGCCCGTAATTCCTCTTGCCGCCTCGTCGCCATAGCTCTAAAGTCCCAGAATCTATCTGGCATTGTCCCACCAGAGTTTTCCAAGCTTCGTTTCCTCAAACAGTTAGACCTTAGTCGAAACTGTCTCACTGGTTCTATCCCGCGCCAATGGGCGACCATGCGATTGGTAGATCTCTCTTTCATGGGAAACAAACTGTCCGGCCCGTTCCCGAAAGTTCTTACCAACATCACCACCCTCAGAAACCTGAGCATCGAAGGAAATCGATTTTCTGGTCCAATTCCACCGGAGGTCGGAAAACTAGTCAACTTGGAAAAATTTGTCTTGGAATCGAATAGCTTCACTGGAGAATTGCCTAAAGCACTAAGGAAGTTGTCGAACTTAATTGATATGAGGATAAGTGACAACAACTTCTCTGGAAAGATTCCTGAGTTCATTAGTAATTGGACACAAATTGAAAAACTGCATATACAAGGCTGTTCACTCGAGGGGCCCATACCTTCGAGTATCTCCACCATGACAAGTTTAACTGATCTGAGAATATCTGACTTAAGAGGTGGAAGATCTCCATTTCCACCGTTGAGCAATATGAAATCCATGAAAACACTGATTCTTAGGAAGTGCTTACTTGTTGGAGGAATCCCCCCATACATTGGGGACATGAAAAAGTTGAAAAATTTAGACCTTAGCTACAATGACTTGATTGGTGATGTTCCTCCTTCTTTCGAACGACTGGAAAAAATAGATTACATATATTTGACAGGAAACAAGCTCAATGGCACTATTCCTAGTTGGGTTTTAGGAAGCAACAAGAATGTGGATCTTTCTAACAACAACTTCACTTGGGAAAGCTCAAGCCCAGCCGAGTGTCCTCGAGGGAGCGTAAATTTAGTAGAGACTTACTCATCGTCTGCCGAAAAAGTAACTAAAATTCATCCCTGCTTAAAAAGGAACTTTCCATGTTCTGCATCAAAGGAACAACATGGTTACTCTTTGCACATTAACTGTGGTGGTAAGGAAGCATTTGTAAGGGATGAAAGATATGAAGCGGATAGAGAAGGGGCTTCAATGTTTTATACTGGCCAGAATTGGGCATTTAGCAGCACGGGAAGCTTTATGGACAATGATGTCGATGCTGATAACTATATCGTAACAAATACATCTGCCCTTTCGCATGTCACCGTGACTGATTCAGAACTGTACACAAAAGCGAGAAATTCTCCTCAATCTCTTACATACTATGGCCTCTGTCTCATAAATGGGAATTACACTGTTAAACTCCACTTTGCAGAGATCATATTTATCAATGACAGTTCATTCAACAGCCTTGGGAGGCGAATTTTTGATGTGTACGTCCAGGAAAAGCTGGTTCTGAAAGATTTTGATATAGAAAAAGAAGCAGGGGGCACAGGCAAGCATGTTATAAAATTTTTTACTGCAGTTGTCACAAGTCATACGTTGAAGATCCATTTCTACTGGGCTGGAAGAGGAACAACAGGAATCCCCCTTAGAGGAAATTATGGTCCTCTGATATCGGCTATTTCCGTTGATCCTAATTTTACGCCTCCCAAGTACAATGTGAAGAAGAATCACACCATCATAATTATTGGGACAACAGCAGCAGCTTTTGTTCTTCTTCTTCTGGTGTTATGTATTATGAAGAGGAACGGATGGCTGGGGGGCAAGGGATCCGTATATAAAGAGCTTAGAGGAATAGACCTGCAAACAGGATTATTTACAATAAGACAGATTAAAGCAGCCACTAAAAATTTTGATGCTGCAAACAAAGTTGGGGAAGGTGGTTTTGGTGCAGTTTACAAGGGTCTCTTGTCAGATGGTACTATAATTGCAGTCAAGCAATTGTCATCAAAATCGAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCTGCACTACAACACCCAAATCTTGTCAAGCTTTATGGATGCTGTGTTGATGGGAACCAACTAATGTTGATTTATGAATACATGGAAAACAATTGCTTATCACGTGCCCTTTTTAGAAATGACCCAGCATCAAAATTGAGATTGGACTGGCCCACCAGGCAGAAAATTTGTTTGGGAATAGCTAGAGGTTTGGCCTATCTGCATGAGGAGTCAAGATTAAAAATTGTACATAGGGACATCAAGACTAGCAATGTGTTGCTTGATAAGGATTTCAATGCTAAAATCTCTGATTTTGGTTTGGCTAAGCTTCATGAAGATGACAATACCCATATCAGCACCCGAGTTGCCGGAACCATTGGTTATATGGCACCGGAATATGCAATGCGTGGATGCTTGACTAGCAAAGCTGATGTTTATAGCTTCGGAGTTGTTGCCCTTGAAATTGTCAGCGGCAAAAGCAATACCAACTACCGGCCTAAGGAGGATTTTATTTACCTACTTGATTGGGCATCTGTTCTACAAGAAAAAGGAAGCCTATTGGAGTTAGTTGATCCAGCCCTGGGCTCAGACTATTCATCAGAAGAAGCAATGGTGATGCTGAACGTGGCTCTCCTCTGCACGAACGCGTCGCCGACTCTGCGGCCGCTAATGTCCCAAGTGGTGAGCATGCTGGAAGGTCGAACTCCAGTGCAGGCCCTTCTTTCTGATCCAGGATTTGCAGCCATCAATTCCAAATTGAAGGCTCTTAGAAATCACTTTTGGCAGCAATTGAGCCCCACTCACAGCTTATCATTGGAAGATTTTCCTAGTGGTTCATTGAGTTCAAATGTGGAGGCAGAAGAGAAATACCATCTTGTAAGACCCCATTCTGTTAAACCTGAAATGTGA 3030 42.9 MAAKSKVHILFSILLLHLATAAKLHRDEVKVLKEIEKKIGKSDWDFALDPCTGHGNWRLLNGKKGFESSVTCDCSFARNSSCRLVAIALKSQNLSGIVPPEFSKLRFLKQLDLSRNCLTGSIPRQWATMRLVDLSFMGNKLSGPFPKVLTNITTLRNLSIEGNRFSGPIPPEVGKLVNLEKFVLESNSFTGELPKALRKLSNLIDMRISDNNFSGKIPEFISNWTQIEKLHIQGCSLEGPIPSSISTMTSLTDLRISDLRGGRSPFPPLSNMKSMKTLILRKCLLVGGIPPYIGDMKKLKNLDLSYNDLIGDVPPSFERLEKIDYIYLTGNKLNGTIPSWVLGSNKNVDLSNNNFTWESSSPAECPRGSVNLVETYSSSAEKVTKIHPCLKRNFPCSASKEQHGYSLHINCGGKEAFVRDERYEADREGASMFYTGQNWAFSSTGSFMDNDVDADNYIVTNTSALSHVTVTDSELYTKARNSPQSLTYYGLCLINGNYTVKLHFAEIIFINDSSFNSLGRRIFDVYVQEKLVLKDFDIEKEAGGTGKHVIKFFTAVVTSHTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPNFTPPKYNVKKNHTIIIIGTTAAAFVLLLLVLCIMKRNGWLGGKGSVYKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLIYEYMENNCLSRALFRNDPASKLRLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLHEDDNTHISTRVAGTIGYMAPEYAMRGCLTSKADVYSFGVVALEIVSGKSNTNYRPKEDFIYLLDWASVLQEKGSLLELVDPALGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFAAINSKLKALRNHFWQQLSPTHSLSLEDFPSGSLSSNVEAEEKYHLVRPHSVKPEM 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32252848 32270862 - Sed0027821.1 Sed05g1886 714512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1886 1009 Pfam Malectin domain 406 589 IPR021720 -
Sed05g1886 1009 CDD STKc_IRAK 672 940 - -
Sed05g1886 1009 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 948 IPR051824 -
Sed05g1886 1009 Gene3D Phosphorylase Kinase; domain 1 636 741 - -
Sed05g1886 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase 742 950 - -
Sed05g1886 1009 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524(InterPro)
Sed05g1886 1009 Gene3D - 403 593 - -
Sed05g1886 1009 SMART serkin_6 666 936 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1886 1009 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 30 193 - -
Sed05g1886 1009 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 741 - -
Sed05g1886 1009 Gene3D Transferase(Phosphotransferase) domain 1 742 947 - -
Sed05g1886 1009 SUPERFAMILY Protein kinase-like (PK-like) 651 939 IPR011009 -
Sed05g1886 1009 Gene3D Ribonuclease Inhibitor 65 258 IPR032675 -
Sed05g1886 1009 ProSiteProfiles Protein kinase domain profile. 666 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1886 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 594 - -
Sed05g1886 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1886 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 224 371 - -
Sed05g1886 1009 Pfam Leucine Rich Repeat 155 176 IPR001611 GO:0005515(InterPro)
Sed05g1886 1009 Pfam Leucine Rich Repeat 108 127 IPR001611 GO:0005515(InterPro)
Sed05g1886 1009 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Sed05g1886 1009 Pfam Leucine Rich Repeat 202 224 IPR001611 GO:0005515(InterPro)
Sed05g1886 1009 SUPERFAMILY L domain-like 67 339 - -
Sed05g1886 1009 Gene3D Ribonuclease Inhibitor 259 363 IPR032675 -
Sed05g1886 1009 Pfam Protein tyrosine and serine/threonine kinase 669 879 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1886 Sed-Chr5:32252848 Sed05g2501 Sed-Chr5:37063857 2.40E-223 dispersed
Sed13g1063 Sed-Chr13:9175758 Sed05g1886 Sed-Chr5:32252848 2.60E-67 dispersed
Sed01g2180 Sed-Chr1:16437352 Sed05g1886 Sed-Chr5:32252848 2.30E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79189 PF07714 PK_Tyr_Ser-Thr 9.70E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1886 - - - 0.0