Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1887 ATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGGGTTTGTGGCCATTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATTTGTGGTCATCGTGTTCCTGCTTCATCGGAGAAATCTTCTTTGCAAGTTAGTGCGTTTTCTTCTGAGATCTTGCCGGACTTTCTGTTTCTGGGAAGCTATGATAATGCTTCTCGGTCTGAACTTTTGAAGACTCAAGGAATCTCCCGCGTTCTTAATACCGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATATGACAAGACCTTACCTTTTGATGATGCGGTTGAATTTCTAGAGCAGTGTGAAAGAGACAAGGCTCGCGTTCTGGTTCACTGCATGTCAGGAAAAAACAGGTCTCCAGCTATTGTAATCGCATTCTTGATGAAATGCAAAGGTTGGAGGCTTGCTCAGAGTTACCAGTGGGTGAAAGAGCGGAGGCCATCTGTCGACTTAACGGAGCCTATCTATCAGCAGCTGCAAGAGTATGAGCAAAAGGTTTTTCGATCAGCAGAGAACTCCCTCCCAACCGTGCCAATCTTCCCTCCTGTCGGCCTGCCTCCATTTAGCTTTGGCTTTCCGAAAGCCAGTAACCCCGTTCCCATAACTCCATTCGATACCATTGGTGCGACATCGATCTTTTCCAGCTCTACCGTAGACGTACCTTCCCATGAGTTCACGTTCGGTACTGGCCAGACTCAAACCAGTTTCTCCACAAGCCCCTTCGGTGCCAATCCACAGAACTAA 786 47.33 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPASSEKSSLQVSAFSSEILPDFLFLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLEQCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTEPIYQQLQEYEQKVFRSAENSLPTVPIFPPVGLPPFSFGFPKASNPVPITPFDTIGATSIFSSSTVDVPSHEFTFGTGQTQTSFSTSPFGANPQN 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32296541 32300936 + Sed0019287.1 Sed05g1887 714513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1887 261 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311(InterPro)
Sed05g1887 261 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 181 IPR029021 -
Sed05g1887 261 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 255 IPR044212 GO:0005634(PANTHER)|GO:0009734(InterPro)|GO:0009738(InterPro)|GO:0033549(PANTHER)|GO:0033549(InterPro)|GO:0043407(InterPro)
Sed05g1887 261 CDD DSP_plant_IBR5-like 47 176 - -
Sed05g1887 261 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470(InterPro)
Sed05g1887 261 Gene3D Protein tyrosine phosphatase superfamily 46 182 IPR029021 -
Sed05g1887 261 SMART dsp_5 46 179 IPR020422 GO:0006470(InterPro)
Sed05g1887 261 Pfam Dual specificity phosphatase, catalytic domain 55 179 IPR000340 GO:0016311(InterPro)
Sed05g1887 261 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311(InterPro)
Sed05g1887 261 FunFam Protein-tyrosine-phosphatase IBR5 36 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3442 Sed-Chr4:44165482 Sed05g1887 Sed-Chr5:32296541 3.10E-133 dispersed
Sed04g3441 Sed-Chr4:44165482 Sed05g1887 Sed-Chr5:32296541 3.10E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1887 K04459 - csv:101211000 472.626