Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1889 ATGCGGCGAGGAAGAGCCACAGATCCATCGGCGGCGGGGGAGGTGCAAACAGTTCATGAACCGCTCAAAGAAGTCCGGTTCAGAGGCGTTCGGAAGCGTCCGTGGGGCCGATACGCCGCCGAGATCAGAGATCCATGGAAGAAGGCTCGCGTTTGGCTCGGCACCTTCGATACGGCGGAGGATGCCGCTAGAGCTTACGACGCCGCCGCTCTCTCTCTCCGTGGACCGAAGGCCAAGACGAATTTCCCGCTGCATCCGTCGGCGATCACTGTTGGTCAGCAAATTCCATTCTCGCAGGAGTTTCATGATTCCGGCGGATTCTGCCAGATTAGCAACATTCCGGTCAATCGACCTACATCGAGTAGCCTTAGCTCCACCGTGGAGTCGTTTAGCGGGCCGCGGGTTCCGATTCCAGCTCGTTCTGTTCCGAATCTCCGCCGCGAGTCCCTGCCTCCGGTCTCGCCTGACGATTGCCACAGCGACTGCGATTCATCGTCTTCGGTTGTTGATAACAGCGAGGATTACGCTCACACGTCGTCGATTCGCAGAGTTTTGCCGTTCGATCTGAATCTACCGCCGCCGCCGCCGCCGCACAACGTCGATTTATCCGGTGATGATCTTCATATTACTACTCTATGTTTTTGA 645 57.21 MRRGRATDPSAAGEVQTVHEPLKEVRFRGVRKRPWGRYAAEIRDPWKKARVWLGTFDTAEDAARAYDAAALSLRGPKAKTNFPLHPSAITVGQQIPFSQEFHDSGGFCQISNIPVNRPTSSSLSSTVESFSGPRVPIPARSVPNLRRESLPPVSPDDCHSDCDSSSSVVDNSEDYAHTSSIRRVLPFDLNLPPPPPPHNVDLSGDDLHITTLCF 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32309138 32310378 - Sed0008801.1 Sed05g1889 714515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1889 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 179 - -
Sed05g1889 214 SMART rav1_2 26 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1889 214 FunFam Ethylene-responsive transcription factor 2 25 85 - -
Sed05g1889 214 CDD AP2 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1889 214 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1889 214 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1889 214 SUPERFAMILY DNA-binding domain 27 84 IPR016177 GO:0003677(InterPro)
Sed05g1889 214 MobiDBLite consensus disorder prediction 123 175 - -
Sed05g1889 214 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1889 214 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1889 214 Pfam AP2 domain 26 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1889 214 MobiDBLite consensus disorder prediction 159 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1889 Sed-Chr5:32309138 Sed05g3230 Sed-Chr5:41941189 2.30E-67 dispersed
Sed05g1889 Sed-Chr5:32309138 Sed05g1898 Sed-Chr5:32393622 8.40E-25 proximal
Sed01g0710 Sed-Chr1:5231683 Sed05g1889 Sed-Chr5:32309138 3.20E-69 wgd
Sed04g3436 Sed-Chr4:44123467 Sed05g1889 Sed-Chr5:32309138 1.10E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38557 PF00847 AP2 9.90E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1889 K09286 - csv:101210265 296.204