Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1892 ATGACAATCGATCACCCGTCCAACCACACCACCGATGATGATTCCGGTCATCTCCATCCTACACTTTCCACGGCAGTTGTCATCAACGGAGCCGACTGCGAGATTAACGCCGGCGATGACCTGTTCGTTCCTCCCCTGAACTTCGCCGTCGTCGACAATGGCATTTTCCGCTCCGGATTCCCCGATTCTTCCAACTTCTCCTTCTTGCAGACCCTAGGCCTTCGATCGATTATATGTCTTTGTCCTGAGCCATATCCTGAGGCGAACGTGGATTTTCTCAAGTCGAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTACTAAGGCCAGTTCAGACAAGGCTGATGCTTATGTAAACTTGATTCTCGAGTGTGTGAGGAATTTGGATATGAGCACCGATCAAATGTACTATTTGGAGCCTTTTGTGAGCATTCCAGATGATACAATTCGCGAAGCACTTAAAGTTATTCTTGATGTGAGGAATCTTCCAGTTTTAATCCATTGCAAAAGAGGAAAACACCGAACTGGCTGTGTTGTGGGATGCTTTAGAAAGCTGCAGAAATGGTGCCTATCGTCAGTCTTTGATGAGTACCAGCGATTTGCAGCTGCAAAAGCAAGAGTTTCAGATCAGAGGTTCATCGAACTGTTCGACATTTCGGGCTTGAAGCATCTGCCATCTTCATTTTCCTGTTCCAAGAGGTAA 705 46.38 MTIDHPSNHTTDDDSGHLHPTLSTAVVINGADCEINAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEANVDFLKSNGIRLFQFGIEGTKASSDKADAYVNLILECVRNLDMSTDQMYYLEPFVSIPDDTIREALKVILDVRNLPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPSSFSCSKR 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32353316 32357939 + Sed0001746.1 Sed05g1892 714518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1892 234 PRINTS Plant and fungal dual specificity phosphatase signature 79 92 IPR020428 GO:0016791(InterPro)
Sed05g1892 234 PRINTS Plant and fungal dual specificity phosphatase signature 145 159 IPR020428 GO:0016791(InterPro)
Sed05g1892 234 PRINTS Plant and fungal dual specificity phosphatase signature 42 59 IPR020428 GO:0016791(InterPro)
Sed05g1892 234 PRINTS Plant and fungal dual specificity phosphatase signature 98 112 IPR020428 GO:0016791(InterPro)
Sed05g1892 234 ProSiteProfiles Dual specificity protein phosphatase domain profile. 47 231 IPR020422 GO:0006470(InterPro)
Sed05g1892 234 CDD PFA-DSP_Siw14 41 218 - -
Sed05g1892 234 Gene3D Protein tyrosine phosphatase superfamily 41 221 IPR029021 -
Sed05g1892 234 ProSitePatterns Tyrosine specific protein phosphatases active site. 167 177 IPR016130 GO:0016311(InterPro)
Sed05g1892 234 PANTHER TYROSINE-PROTEIN PHOSPHATASE 29 228 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Sed05g1892 234 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 219 IPR029021 -
Sed05g1892 234 Pfam Tyrosine phosphatase family 43 224 IPR004861 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3434 Sed-Chr4:44101419 Sed05g1892 Sed-Chr5:32353316 3.50E-77 dispersed
Sed05g1892 Sed-Chr5:32353316 Sed05g1894 Sed-Chr5:32353316 6.90E-89 dispersed
Sed05g1892 Sed-Chr5:32353316 Sed05g1893 Sed-Chr5:32353316 1.60E-114 tandem
Sed01g0708 Sed-Chr1:5188054 Sed05g1892 Sed-Chr5:32353316 8.90E-80 wgd
Sed04g3433 Sed-Chr4:44101419 Sed05g1892 Sed-Chr5:32353316 7.50E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1892 K18045 - csv:101209768 334.724