Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1892 | ATGACAATCGATCACCCGTCCAACCACACCACCGATGATGATTCCGGTCATCTCCATCCTACACTTTCCACGGCAGTTGTCATCAACGGAGCCGACTGCGAGATTAACGCCGGCGATGACCTGTTCGTTCCTCCCCTGAACTTCGCCGTCGTCGACAATGGCATTTTCCGCTCCGGATTCCCCGATTCTTCCAACTTCTCCTTCTTGCAGACCCTAGGCCTTCGATCGATTATATGTCTTTGTCCTGAGCCATATCCTGAGGCGAACGTGGATTTTCTCAAGTCGAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTACTAAGGCCAGTTCAGACAAGGCTGATGCTTATGTAAACTTGATTCTCGAGTGTGTGAGGAATTTGGATATGAGCACCGATCAAATGTACTATTTGGAGCCTTTTGTGAGCATTCCAGATGATACAATTCGCGAAGCACTTAAAGTTATTCTTGATGTGAGGAATCTTCCAGTTTTAATCCATTGCAAAAGAGGAAAACACCGAACTGGCTGTGTTGTGGGATGCTTTAGAAAGCTGCAGAAATGGTGCCTATCGTCAGTCTTTGATGAGTACCAGCGATTTGCAGCTGCAAAAGCAAGAGTTTCAGATCAGAGGTTCATCGAACTGTTCGACATTTCGGGCTTGAAGCATCTGCCATCTTCATTTTCCTGTTCCAAGAGGTAA | 705 | 46.38 | MTIDHPSNHTTDDDSGHLHPTLSTAVVINGADCEINAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEANVDFLKSNGIRLFQFGIEGTKASSDKADAYVNLILECVRNLDMSTDQMYYLEPFVSIPDDTIREALKVILDVRNLPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPSSFSCSKR | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32353316 | 32357939 | + | Sed0001746.1 | Sed05g1892 | 714518 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1892 | 234 | PRINTS | Plant and fungal dual specificity phosphatase signature | 79 | 92 | IPR020428 | GO:0016791(InterPro) | |
Sed05g1892 | 234 | PRINTS | Plant and fungal dual specificity phosphatase signature | 145 | 159 | IPR020428 | GO:0016791(InterPro) | |
Sed05g1892 | 234 | PRINTS | Plant and fungal dual specificity phosphatase signature | 42 | 59 | IPR020428 | GO:0016791(InterPro) | |
Sed05g1892 | 234 | PRINTS | Plant and fungal dual specificity phosphatase signature | 98 | 112 | IPR020428 | GO:0016791(InterPro) | |
Sed05g1892 | 234 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 47 | 231 | IPR020422 | GO:0006470(InterPro) | |
Sed05g1892 | 234 | CDD | PFA-DSP_Siw14 | 41 | 218 | - | - | |
Sed05g1892 | 234 | Gene3D | Protein tyrosine phosphatase superfamily | 41 | 221 | IPR029021 | - | |
Sed05g1892 | 234 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 167 | 177 | IPR016130 | GO:0016311(InterPro) | |
Sed05g1892 | 234 | PANTHER | TYROSINE-PROTEIN PHOSPHATASE | 29 | 228 | - | GO:0005737(PANTHER)|GO:0016791(PANTHER) | |
Sed05g1892 | 234 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 42 | 219 | IPR029021 | - | |
Sed05g1892 | 234 | Pfam | Tyrosine phosphatase family | 43 | 224 | IPR004861 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3434 | Sed-Chr4:44101419 | Sed05g1892 | Sed-Chr5:32353316 | 3.50E-77 | dispersed | |
Sed05g1892 | Sed-Chr5:32353316 | Sed05g1894 | Sed-Chr5:32353316 | 6.90E-89 | dispersed | |
Sed05g1892 | Sed-Chr5:32353316 | Sed05g1893 | Sed-Chr5:32353316 | 1.60E-114 | tandem | |
Sed01g0708 | Sed-Chr1:5188054 | Sed05g1892 | Sed-Chr5:32353316 | 8.90E-80 | wgd | |
Sed04g3433 | Sed-Chr4:44101419 | Sed05g1892 | Sed-Chr5:32353316 | 7.50E-115 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1892 | K18045 | - | csv:101209768 | 334.724 |