Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1893 ATGACAATCGATCACCCGTCCAACCACACCACCGATGATGATTCCGGTCATCTCCATCCTACACTTTCCACGGCAGTTGTCATCAACGGAGCCGACTGCGAGATTAACGCCGGCGATGACCTGTTCGTTCCTCCCCTGAACTTCGCCGTCGTCGACAATGGCATTTTCCGCTCCGGATTCCCCGATTCTTCCAACTTCTCCTTCTTGCAGACCCTAGGCCTTCGATCGATTATATGTCTTTGTCCTGAGCCATATCCTGAGGCGAACGTGGATTTTCTCAAGTCGAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTACTAAGGAGCCTTTTGTGAGCATTCCAGATGATACAATTCGCGAAGCACTTAAAGTTATTCTTGATGTGAGGAATCTTCCAGTTTTAATCCATTGCAAAAGAGGAAAACACCGAACTGGCTGTGTTGTGGGATGCTTTAGAAAGCTGCAGAAATGGTGCCTATCGTCAGTCTTTGATGAGTACCAGCGATTTGCAGCTGCAAAAGCAAGAGTTTCAGATCAGAGGTTCATCGAACTGTTCGACATTTCGGGCTTGAAGCATCTGCCATCTTCATTTTCCTGTTCCAAGAGGTAA 615 47.15 MTIDHPSNHTTDDDSGHLHPTLSTAVVINGADCEINAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEANVDFLKSNGIRLFQFGIEGTKEPFVSIPDDTIREALKVILDVRNLPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPSSFSCSKR 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32353316 32357939 + Sed0001746.2 Sed05g1893 714519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1893 204 PANTHER TYROSINE-PROTEIN PHOSPHATASE 25 198 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Sed05g1893 204 PRINTS Plant and fungal dual specificity phosphatase signature 115 129 IPR020428 GO:0016791(InterPro)
Sed05g1893 204 PRINTS Plant and fungal dual specificity phosphatase signature 42 59 IPR020428 GO:0016791(InterPro)
Sed05g1893 204 PRINTS Plant and fungal dual specificity phosphatase signature 98 112 IPR020428 GO:0016791(InterPro)
Sed05g1893 204 PRINTS Plant and fungal dual specificity phosphatase signature 79 92 IPR020428 GO:0016791(InterPro)
Sed05g1893 204 ProSiteProfiles Dual specificity protein phosphatase domain profile. 47 201 IPR020422 GO:0006470(InterPro)
Sed05g1893 204 Pfam Tyrosine phosphatase family 43 194 IPR004861 -
Sed05g1893 204 Gene3D Protein tyrosine phosphatase superfamily 41 191 IPR029021 -
Sed05g1893 204 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 189 IPR029021 -
Sed05g1893 204 ProSitePatterns Tyrosine specific protein phosphatases active site. 137 147 IPR016130 GO:0016311(InterPro)
Sed05g1893 204 CDD PFA-DSP_Siw14 41 188 - -
Sed05g1893 204 FunFam probable tyrosine-protein phosphatase At1g05000 41 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0708 Sed-Chr1:5188054 Sed05g1893 Sed-Chr5:32353316 2.70E-84 dispersed
Sed04g3433 Sed-Chr4:44101419 Sed05g1893 Sed-Chr5:32353316 3.10E-97 dispersed
Sed05g1893 Sed-Chr5:32353316 Sed05g3223 Sed-Chr5:41876659 7.60E-84 dispersed
Sed05g1892 Sed-Chr5:32353316 Sed05g1893 Sed-Chr5:32353316 1.60E-114 tandem
Sed05g1893 Sed-Chr5:32353316 Sed05g1894 Sed-Chr5:32353316 8.50E-67 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1893 K18045 - csv:101209768 350.517