Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1905 ATGGGCCGCCGAGTTCGCACTAACCCATTTCTCTCCAACCAAGAAGATCCCGGTTCCACGTCCGACGACGGCCTGCCGGACTCCCCTTACGACGGCAATTACCCTACACCGGCGGCCGATCCTCCGGCCAAAAAAAGCAGGGGAGTGCAAAAAAGAGTGGTGTCCGTACCGATCGGTGACGTGGAGGGATCTAAGAGCAAAGGAGATGCATATCCACCGTACGATTCGTGGGCATGGAGGAAATACGGCCAAAAGCCGATCAAGGGCTCTCCTTATCCCAGGGGATATTACCGATGTAGTAGCTCCAAGGGCTGCCCAGCAAAAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAACTCCTCATCACCTACGCCTTCGACCACAACCACCAACTCCCCGCCGCCAAATCTCACCACCGCAATCCCTCGCCGTCCTCCGCCGACGACCGCTCGCCGCCGGAGAGCACGACCCCGTCGTCCTCCACCACCACCACCTCGGACGACCACCACCACACCAGCGCCGTCCCCACGTCGCCGGCGGCGGTTTTCGCGAGTCAGCCGGAGCTGGAACTCGGCGGCGGCTTGGCACCGTGCATCGGCGATTTCGGATGGTTGGCTGACGTGGCGTACGATGGAATCCTTGAGGGCCCGATTTTCGGGGGAGGCGATGTATTCGAAGACGCCGATGTAATGGTTTTGTCGACACGAGGAGATGACGTGGACGAGTCGCTATTTGCGGATCTTGGGGAATTGCCCGACGGCTCGGTGGTTTTCGGCCGGCGTCTAGCGGTCTAA 798 60.28 MGRRVRTNPFLSNQEDPGSTSDDGLPDSPYDGNYPTPAADPPAKKSRGVQKRVVSVPIGDVEGSKSKGDAYPPYDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPAKKQVERSRVDPTKLLITYAFDHNHQLPAAKSHHRNPSPSSADDRSPPESTTPSSSTTTTSDDHHHTSAVPTSPAAVFASQPELELGGGLAPCIGDFGWLADVAYDGILEGPIFGGGDVFEDADVMVLSTRGDDVDESLFADLGELPDGSVVFGRRLAV 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32418315 32421570 - Sed0003607.1 Sed05g1905 714531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1905 265 ProSiteProfiles WRKY domain profile. 75 134 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1905 265 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 41 179 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed05g1905 265 MobiDBLite consensus disorder prediction 7 21 - -
Sed05g1905 265 MobiDBLite consensus disorder prediction 1 75 - -
Sed05g1905 265 Pfam WRKY DNA -binding domain 75 132 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1905 265 Gene3D WRKY domain 61 135 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1905 265 SMART WRKY_cls 73 133 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1905 265 SUPERFAMILY WRKY DNA-binding domain 69 134 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1905 265 MobiDBLite consensus disorder prediction 135 177 - -
Sed05g1905 265 MobiDBLite consensus disorder prediction 137 174 - -
Sed05g1905 265 FunFam WRKY transcription factor 65 60 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3383 Sed-Chr4:43815880 Sed05g1905 Sed-Chr5:32418315 1.90E-96 dispersed
Sed05g1905 Sed-Chr5:32418315 Sed10g0042 Sed-Chr10:271357 1.30E-27 dispersed
Sed01g2171 Sed-Chr1:16361670 Sed05g1905 Sed-Chr5:32418315 4.50E-41 wgd
Sed04g3382 Sed-Chr4:43815880 Sed05g1905 Sed-Chr5:32418315 1.20E-95 wgd
Sed05g1905 Sed-Chr5:32418315 Sed08g2207 Sed-Chr8:35866387 6.10E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38559 PF03106 WRKY 2.70E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1905 - - - 0.0