Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1911 ATGGAAGTTGAAGAAGACGATTACCGAAGAAAAGAGCAGCTCGTTCTCGTCGCCATTGTTGTTCTTGCCTCTCTCGCGCTCGTTTCTCTGCTCGTCGCTTTCAGCTACTACTGCTATATCAGTAACAAGGTCTCTAAACGCCTCAAGATCCGCAAAAGGACTGATCTTGAAGACACAGGTAGTTTTGAAAATGTTAAAGAATTTTCCACCGAGAAAGGCCTCCAAGTGTTCACCTTCAAGCAGCTACACTCAGCAACTAGTGGTTTTAGCAAGTCAAATGTGGTTGGACACGGTAGCTTTGGACATGTATATCGAGGAGTCCTCAACGATGGGAGGAAGGTCGCGATTAAGCTTATGGATCAAGCGGGTAAGCAGGGAGAGGACGAATTTAAAGTTGAGGTGGAACTGTTAAGTCGGCTTCATTCGCCATATTTGTTGGCATTGCTCGGGTATTGCTCGGATAGCAATCATAAATTGCTGGTATATGAGTTCATGGCGAATGGCGGTCTGCAAGAACATCTGTACCCTGTTAGCCGTTTAAATTCCGCCAGCGTTAAGTTGGATTGGGAAACACGGTTGAGAGTTGCGCTTGAAGCTGCCAAAGGTTTAGAGTATTTACACGAACACGTAAGTCCACCAGTAATTCACAGGGATTTCAAGAGCAGCAATGTCCTGCTGGACAAGAATCTTCATGCCAAGGTTTCTGATTTTGGATTGGCAAAGATTGGCTCAGACAAAGCAGGGGGGCACGTCTCGACTCGAGTATTGGGAACACAAGGCTATGTTGCACCCGAGTATGCGCTGACAGGGCATTTAACAACAAAGTCAGATGTCTATAGTTATGGAGTTGTCCTCTTGGAGCTGCTTACAGGCCGAGTTCCTGTTGATATGACAAGAACTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTTTGCTAAGGTTGACTGATAGGGAGAAAGTGATGCATATAATGGACCCTGCATTGGAAGGCCAGTATTCCATGAAGGATGTTGTTCAAGTCGCAGCGATCGCAGCCATGTGCGTTCAACCCGAGGCGGATTACAGGCCGCTGATGGCTGATGTTGTCCAGTCTCTGGTTCCACTGGCGAGAAATTACAGGACAGCTTCGAAGATCGGTAGCAGTTCTAGCTCCAGCGCTACTAAATCACCTGTGGCACACGACAATGCTAGTTCAGGAGACTGA 1203 47.38 MEVEEDDYRRKEQLVLVAIVVLASLALVSLLVAFSYYCYISNKVSKRLKIRKRTDLEDTGSFENVKEFSTEKGLQVFTFKQLHSATSGFSKSNVVGHGSFGHVYRGVLNDGRKVAIKLMDQAGKQGEDEFKVEVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPVSRLNSASVKLDWETRLRVALEAAKGLEYLHEHVSPPVIHRDFKSSNVLLDKNLHAKVSDFGLAKIGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMTRTPGEASLVSWALLRLTDREKVMHIMDPALEGQYSMKDVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLARNYRTASKIGSSSSSSATKSPVAHDNASSGD 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32475863 32484711 - Sed0022674.1 Sed05g1911 714537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1911 400 FunFam Serine/threonine-protein kinase PBS1 57 164 - -
Sed05g1911 400 ProSitePatterns Protein kinases ATP-binding region signature. 95 117 IPR017441 GO:0005524(InterPro)
Sed05g1911 400 CDD STKc_IRAK 95 368 - -
Sed05g1911 400 Gene3D Phosphorylase Kinase; domain 1 50 164 - -
Sed05g1911 400 FunFam Receptor-like serine/threonine-protein kinase ALE2 165 385 - -
Sed05g1911 400 MobiDBLite consensus disorder prediction 377 400 - -
Sed05g1911 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1911 400 Gene3D Transferase(Phosphotransferase) domain 1 165 388 - -
Sed05g1911 400 ProSiteProfiles Protein kinase domain profile. 89 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1911 400 PANTHER OS01G0750732 PROTEIN 16 392 IPR050885 -
Sed05g1911 400 Pfam Protein tyrosine and serine/threonine kinase 92 365 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1911 400 SUPERFAMILY Protein kinase-like (PK-like) 63 365 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3947 Sed-Chr4:47510153 Sed05g1911 Sed-Chr5:32475863 9.00E-111 dispersed
Sed04g3948 Sed-Chr4:47510153 Sed05g1911 Sed-Chr5:32475863 7.60E-84 dispersed
Sed05g1911 Sed-Chr5:32475863 Sed12g1762 Sed-Chr12:28729590 2.50E-86 dispersed
Sed12g0637 Sed-Chr12:3788138 Sed05g1911 Sed-Chr5:32475863 5.10E-63 dispersed
Sed05g1911 Sed-Chr5:32475863 Sed05g1912 Sed-Chr5:32475863 5.90E-157 tandem
Sed05g1911 Sed-Chr5:32475863 Sed08g2223 Sed-Chr8:35954674 8.60E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79190 PF07714 PK_Tyr_Ser-Thr 1.00E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1911 - - - 0.0