Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1938 ATGAGCAGTGTTTGTGCTGAGAATCAGAAATTTCAGTTTCTATTTCCGTTTTGTTCTTCCGATTCTGTTTCGGAGATGAATCGAAACGGAGAAATGTGTTCCGATTCGCCGAGATTTTCGTCTGCTGTTGAATCGCTTTTGCAGAAGTTCTTGCCGTCCAACGGCGAGGAGGAGGCGGAGGGCGACGGCGATCCGTATTCGTCCGATCATTTCCGGATGTTTGAGTTTAAGGTGCGGCGGTGTACTCGGAGTCGGAGCCACGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGGCGAGATCCTCGTCGGTTTCATTACTCCGGCGCGATGTGTCCGGAGTTCCGCCGCGGCGGTTGCGGCCGTGGTGACGGATGCGAGTTCGCTCATGGAGTTTTTGAGTGCTGGCTGCATCCGGCGAGGTACCGAACGGAGGCTTGTAAGGATGGGAAGAACTGTAAGAGGAAGGTTTGTTTCTTCGCTCATTCTCCTCGTGAGCTTCGGATTCTTCCGCCGGTGAATGATTTCCACGGCGGCGGCTGCGGCGGAGGAGGAGGATCTTGTTCCTCGCCGAATAAGAAGAGTTCTAATCTCAGATCTACTGCTGGCTCTAATCACTGCTGTTTGTTTTGTCACTGCGGCGGATCCGCCGCCACCTCCTCGCCGACGTCGACGCTTTTCGGAATGTCTCATCTCTCTCCGCCGCACTCGCCGCCTCTCTCTCCGGTTGAACTGCGATCGATGAATGGATTTTCGCCAATTTCGAGGTATAATAATCCTGATCCGTCTACATTAAATGGAATTTTTAGTTATAAAGATGCACTGACCGAGCTCATGAGCTCTATTGAATCTATGAATATCGACGACGCTAATGGCGCCGCCGCCATCTCCGCCGCTAGACCAACGCCTTGGATTGATGTATCATCTCTCAACTCTGAAGATCAACCGCAGTTTATTCTCTCACCTTCCTCTCCAAATATCTCGGCCGCGTCGGTGATATTTTCCGGCGAACATAAAGCTATCGCCGACAACGGATGGGCCTCCGGTTCCTGTTCCGGTCCCGATCTCGGGTGGGTTAACGATCTGCTAATGTAA 1107 52.66 MSSVCAENQKFQFLFPFCSSDSVSEMNRNGEMCSDSPRFSSAVESLLQKFLPSNGEEEAEGDGDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGAMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRILPPVNDFHGGGCGGGGGSCSSPNKKSSNLRSTAGSNHCCLFCHCGGSAATSSPTSTLFGMSHLSPPHSPPLSPVELRSMNGFSPISRYNNPDPSTLNGIFSYKDALTELMSSIESMNIDDANGAAAISAARPTPWIDVSSLNSEDQPQFILSPSSPNISAASVIFSGEHKAIADNGWASGSCSGPDLGWVNDLLM 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32757663 32759173 - Sed0000892.1 Sed05g1938 714564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1938 368 PANTHER UNKEMPT FAMILY MEMBER 25 332 IPR045234 -
Sed05g1938 368 ProSiteProfiles Zinc finger C3H1-type profile. 111 137 IPR000571 GO:0046872(InterPro)
Sed05g1938 368 Gene3D - 110 173 - -
Sed05g1938 368 SMART c3hfinal6 110 136 IPR000571 GO:0046872(InterPro)
Sed05g1938 368 SMART c3hfinal6 145 168 IPR000571 GO:0046872(InterPro)
Sed05g1938 368 FunFam Zinc finger CCCH domain-containing protein 66 68 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1938 Sed-Chr5:32757663 Sed12g1796 Sed-Chr12:29019216 2.00E-58 dispersed
Sed04g3374 Sed-Chr4:43754042 Sed05g1938 Sed-Chr5:32757663 1.50E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38562 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1938 K23047 - csv:101211149 523.857