Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1939 ATGTGTAAAGTCAAACCTTTTCTATTTATATCGCACATAAGTCTTATTCAAAAAAAAAGAAAAAAAAAATTCATAATCTTCTCTCTCTCTAAAACTCTATTTCTCTCTCCTCTACTTCTCCCATTACTGAAAAAAAAAAGAAAAAAAATACAAATCTCAATGACTACTGGAAGAGAAATTCTCCACAAAATGAAGGTGAAGGCTGGGTTTTGTTCATCAGCAGCGGATGAATCTGTGAAAGGGAAAGGAAAAGTGACAAAGAATAAGATAAGTCATGGAAGTCATTTGGTAAAGGGGAAAACTAATCATCCAATGGAAGATTATTTGGTCACTGATTTCAAGCAACTCAAGGATCATGAACTGGGTTTGTTTGCCATTTTTGATGGCCATTTGGGCCATGATGTTGCCAATTTCTTGCACACTAATCTCTTTAATAATATCCTCAAAGAGGCTGATTTCTGGAGCGAAACAAAAAAGGCAATAAAAAGAGCATACAAGAAAACAGACGAAGAGATATTGGAGAAAGTTAAGCAACTTGGAAGAGGCGGATCAACGGCTGTAACCGCCATATTGATCGACGGTCAGAAACTCATCGTAGCCAACGTCGGAGATTCAAGAGCCGTTTTGTGCAAAAACGGCGTCGCTGAGCAACTTTCCGTTGACCACGAACCCACCAGAGAAAAAAGAGACATTGAAAGCCGTGGTGGCTTTGTTTCAAATCTTCCAGGTGATGTTCCACGTGTCGATGGACAATTGGCGGTCGCCAGAGCATTTGGGGATCGGAGCTTGAAAGTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAATGGTGGATGAAACTACAGAATTCATGATTTTGGCCAGTGATGGCATTTGGAAGGTAATGACGAACAAAGAGGCAGTAGAATCTATTAGACACATAAAAGACGCAAACTTAGCAGCCAAACGACTTATCGACGAAGCAGTATCTAGAAAAAGCAAAGACGACATATCGTGCATTGTTGTTAGGTTTCAGTGA 1020 40.1 MCKVKPFLFISHISLIQKKRKKKFIIFSLSKTLFLSPLLLPLLKKKRKKIQISMTTGREILHKMKVKAGFCSSAADESVKGKGKVTKNKISHGSHLVKGKTNHPMEDYLVTDFKQLKDHELGLFAIFDGHLGHDVANFLHTNLFNNILKEADFWSETKKAIKRAYKKTDEEILEKVKQLGRGGSTAVTAILIDGQKLIVANVGDSRAVLCKNGVAEQLSVDHEPTREKRDIESRGGFVSNLPGDVPRVDGQLAVARAFGDRSLKVHLSSEPDVEVKMVDETTEFMILASDGIWKVMTNKEAVESIRHIKDANLAAKRLIDEAVSRKSKDDISCIVVRFQ 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32760378 32764413 - Sed0020328.1 Sed05g1939 714565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1939 339 Gene3D - 84 339 IPR036457 -
Sed05g1939 339 FunFam Probable protein phosphatase 2C 39 82 339 - -
Sed05g1939 339 CDD PP2Cc 90 338 IPR001932 -
Sed05g1939 339 SMART PP2C_4 81 336 IPR001932 -
Sed05g1939 339 SUPERFAMILY PP2C-like 87 338 IPR036457 -
Sed05g1939 339 ProSiteProfiles PPM-type phosphatase domain profile. 91 338 IPR001932 -
Sed05g1939 339 SMART PP2C_SIG_2 96 338 IPR001932 -
Sed05g1939 339 PANTHER PROTEIN PHOSPHATASE 78 336 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g1939 339 Pfam Protein phosphatase 2C 101 331 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1939 Sed-Chr5:32760378 Sed05g2558 Sed-Chr5:37472780 1.00E-101 dispersed
Sed05g1939 Sed-Chr5:32760378 Sed04g2407 Sed-Chr4:37377669 1.30E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1939 K17506 - csv:101211399 489.96