Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1942 ATGGCAGATTCATCACACCGTTCGTTGGCGTTTCAGAAGATACATTGTCATTCTTACCTCATATCTAGGCTTTCCCCTGGCTTTCAGACCATACCCGACAATACAACAGGTGTATGTTCTAATGGAGTTTTGGGGAACCCCTTAAAGATAGCTTATCATGGCGCTGGCTTGGCTGGAGTTTCATCCACTTCTCCTTTTCTTGTACAAGCTCCTTCTGAAAAAGGTGCAGCTGGCTTTGCTGTGGATTTTCTTATGGGAGGAGTATCTGCTGCTGTTTCGAAAACAGCTGCTGCTCCAATTGAGCGTGTCAAACTACTGATTCAGAATCAGGATGAGATGCTTAAAACTGGTAGACTATCTGAGCCATACAAAGGAATTACTGACTGCTTTGCTCGAACAATCAAAGATGAAGGAATCATTGCCCTGTGGAGGGGGAATACTGCAAATGTTATCAGATACTTCCCCACACAAGCTTTGAATTTTGCCTTCAAGGATTACTTCAAGAGGCTGTTCAACTTCAAGAAAGACAGGGATGGTTATTGGAAATGGTTTGCTGGGAATTTGGCCTCTGGTGGGGCTGCTGGTGCTTCATCTCTTCTATTTGTTTATTCCCTTGATTATGCTAGAACTCGTCTGGCCAATGATTCTAAGGCTGCTAAAAAGGGCGGCGAGAGACAGTTTAATGGTCTTGTTGATGTTTACCAGAAGACCCTTAAATCTGATGGCATTGCTGGGCTGTATCGTGGATTTAACATCTCTTGTGTAGGCATTATCGTGTATCGTGGTCTTTACTTCGGAATGTATGATTCATTGAAGCCCATGGTTCTGGTTGGCGAGTTGCAGGATCGTTTCCTTGCTAGCTTCTTGCTTGGATGGTGCATCACAATAGGAGCAGGTTTGGCTTCTTACCCCATTGATACCATTCGAAGAAGAATGATGATGACCTCAGGAGAAGCAGTCAAGTACAATAGCTCCTTGGACGCTTTCAAACAAATCATCAAGAATGAGGGTCCTAAATCTCTCTTCAAGGGTGCAGGGGCAAACATTTTACGTGCCGTTGCAGGTGCCGGCGTGTTGGCTGGGTACGATAAGCTTCAGCTCATTGTTCTTGGCAAGAAATATGGTTCCGGCGGTGGCGGTTAA 1143 44.97 MADSSHRSLAFQKIHCHSYLISRLSPGFQTIPDNTTGVCSNGVLGNPLKIAYHGAGLAGVSSTSPFLVQAPSEKGAAGFAVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKTGRLSEPYKGITDCFARTIKDEGIIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDSKAAKKGGERQFNGLVDVYQKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPMVLVGELQDRFLASFLLGWCITIGAGLASYPIDTIRRRMMMTSGEAVKYNSSLDAFKQIIKNEGPKSLFKGAGANILRAVAGAGVLAGYDKLQLIVLGKKYGSGGGG 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32787849 32792981 + Sed0018881.1 Sed05g1942 714568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1942 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 286 368 IPR018108 -
Sed05g1942 380 SUPERFAMILY Mitochondrial carrier 78 364 IPR023395 -
Sed05g1942 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 77 170 IPR018108 -
Sed05g1942 380 FunFam ADP,ATP carrier protein, mitochondrial 80 375 - -
Sed05g1942 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 182 274 IPR018108 -
Sed05g1942 380 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 74 376 IPR002113 GO:0005471(PANTHER)|GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed05g1942 380 PRINTS Mitochondrial carrier protein signature 291 313 IPR002067 GO:0055085(InterPro)
Sed05g1942 380 PRINTS Mitochondrial carrier protein signature 145 165 IPR002067 GO:0055085(InterPro)
Sed05g1942 380 PRINTS Mitochondrial carrier protein signature 82 95 IPR002067 GO:0055085(InterPro)
Sed05g1942 380 PRINTS Mitochondrial carrier protein signature 247 265 IPR002067 GO:0055085(InterPro)
Sed05g1942 380 PRINTS Mitochondrial carrier protein signature 95 109 IPR002067 GO:0055085(InterPro)
Sed05g1942 380 PRINTS Mitochondrial carrier protein signature 197 215 IPR002067 GO:0055085(InterPro)
Sed05g1942 380 PRINTS Adenine nucleotide translocator signature 287 303 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed05g1942 380 PRINTS Adenine nucleotide translocator signature 182 195 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed05g1942 380 PRINTS Adenine nucleotide translocator signature 79 91 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed05g1942 380 PRINTS Adenine nucleotide translocator signature 156 168 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed05g1942 380 PRINTS Adenine nucleotide translocator signature 123 144 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Sed05g1942 380 Gene3D Mitochondrial carrier domain 80 375 IPR023395 -
Sed05g1942 380 Pfam Mitochondrial carrier protein 182 275 IPR018108 -
Sed05g1942 380 Pfam Mitochondrial carrier protein 78 174 IPR018108 -
Sed05g1942 380 Pfam Mitochondrial carrier protein 282 370 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1942 Sed-Chr5:32787849 Sed09g1385 Sed-Chr9:37766694 3.30E-157 dispersed
Sed05g1942 Sed-Chr5:32787849 Sed08g1770 Sed-Chr8:32541841 5.80E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1942 K05863 - csv:101212128 645.966