Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1943 ATGTCTTCGTTTTCGTTCTCGTTCTCGTCTTTTAAAGTCTTAATCTTGTTACTCGTTCTGTTATCTTTTCTGTTTAACGGTCTCAATGCCAATCACGGCGAGGTAACCACCCGTAACAGCCACCACCACCGTGCTCGTTCAACGAGCCTAAACCCGAGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAAGTAATTTACTCCGACCCGAAAAACCACACGACCAATTGGGTCGGGCCACAAGTTTGCAACTACTTCGGAGTGTACTGTGCCCCAGCTCTCGACGACTCGAACCTCCAAGTCGTTGCGGGAATCGACTTAAACCACGGCGACATTGCCGGATTCCTCCCAAACGAATTAGGCCTTTTAAGAGACCTTGCTCTGCTCCATCTCAACAGCAACCGTTTCTGTGGCATTTTGCCTCAATCTTTATCAAATCTTTCCCTCCTTTTTGAACTTGATCTAAGCAACAACAGATTCGTTGGCCCTTTCCCTTCTGTTGTTCTTCAGCTCCCAAAATTAACATATCTCGACCTTCGATTCAACGAGTTCGAAGGCTCGATTCCGCCCGAAATCTTCGACATTAGCCTCGACGCCATTTTCATCAACAGCAACCGTTTCACCAACATTATCCCTCAAAACATCAGTGGAAAATCAGCATCTGTCATTGTATTTGCCAACAACAATTTAAAGGGTTGTCTCCCACCAACAATTGCAAGTTTTGCAAACAATTTGGAAGAGCTTTTGTTGATGAACACTGGTTTATCTGGCTGCTTGCCTCAAGAAATTGGATTTTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAGTGGGTCAATTGCCATATAGTTTAACTGGATTGGCTCAATTGGAGCAATTGAATTTAGCCCACAATTTGTTTAGTGGGAATTTGTATGAAAATATCTGCAGCCTTCCAAAATTGGAGAATTTGACAGTTTCTTACAATTACTTTTGTGAGGAAGAAGGGATTTGCCGGAATCTGACGGCGGAGGGGATAGCTTTTGACGATCGCCGGAATTGTTTGCCGGAAAAGCCGCTTCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGATCGTCATGTGGACTGTTTTGCACATTCTTGCGGCGGCGGCGACGGTGGTTATGGTTCAAGTATTGCGGCGGCTCCGGCCTCGATGCCCATTTCTTCTTCGTCCGTTTCTGCCCCTACCCACTTGTGA 1236 45.15 MSSFSFSFSSFKVLILLLVLLSFLFNGLNANHGEVTTRNSHHHRARSTSLNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPQVCNYFGVYCAPALDDSNLQVVAGIDLNHGDIAGFLPNELGLLRDLALLHLNSNRFCGILPQSLSNLSLLFELDLSNNRFVGPFPSVVLQLPKLTYLDLRFNEFEGSIPPEIFDISLDAIFINSNRFTNIIPQNISGKSASVIVFANNNLKGCLPPTIASFANNLEELLLMNTGLSGCLPQEIGFLYKLKVLDVSFNKLVGQLPYSLTGLAQLEQLNLAHNLFSGNLYENICSLPKLENLTVSYNYFCEEEGICRNLTAEGIAFDDRRNCLPEKPLQRSKKECSAVVDRHVDCFAHSCGGGDGGYGSSIAAAPASMPISSSSVSAPTHL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32794399 32795790 + Sed0002905.1 Sed05g1943 714569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1943 411 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 394 IPR051582 -
Sed05g1943 411 FunFam Leucine-rich repeat extensin-like protein 1 58 219 - -
Sed05g1943 411 SUPERFAMILY L domain-like 57 331 - -
Sed05g1943 411 Pfam Leucine rich repeat 246 304 IPR001611 GO:0005515(InterPro)
Sed05g1943 411 Pfam Leucine rich repeat 128 185 IPR001611 GO:0005515(InterPro)
Sed05g1943 411 Gene3D Ribonuclease Inhibitor 223 345 IPR032675 -
Sed05g1943 411 Gene3D Ribonuclease Inhibitor 56 222 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1943 Sed-Chr5:32794399 Sed12g0961 Sed-Chr12:5979910 2.20E-50 dispersed
Sed05g1943 Sed-Chr5:32794399 Sed02g1338 Sed-Chr2:49718184 2.40E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1943 - - - 0.0