Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1943 ATGTCTTCGTTTTCGTTCTCGTTCTCGTCTTTTAAAGTCTTAATCTTGTTACTCGTTCTGTTATCTTTTCTGTTTAACGGTCTCAATGCCAATCACGGCGAGGTAACCACCCGTAACAGCCACCACCACCGTGCTCGTTCAACGAGCCTAAACCCGAGACTCCATCAAGCATTCCTTGCTCTCCAAGCATGGAAAAAAGTAATTTACTCCGACCCGAAAAACCACACGACCAATTGGGTCGGGCCACAAGTTTGCAACTACTTCGGAGTGTACTGTGCCCCAGCTCTCGACGACTCGAACCTCCAAGTCGTTGCGGGAATCGACTTAAACCACGGCGACATTGCCGGATTCCTCCCAAACGAATTAGGCCTTTTAAGAGACCTTGCTCTGCTCCATCTCAACAGCAACCGTTTCTGTGGCATTTTGCCTCAATCTTTATCAAATCTTTCCCTCCTTTTTGAACTTGATCTAAGCAACAACAGATTCGTTGGCCCTTTCCCTTCTGTTGTTCTTCAGCTCCCAAAATTAACATATCTCGACCTTCGATTCAACGAGTTCGAAGGCTCGATTCCGCCCGAAATCTTCGACATTAGCCTCGACGCCATTTTCATCAACAGCAACCGTTTCACCAACATTATCCCTCAAAACATCAGTGGAAAATCAGCATCTGTCATTGTATTTGCCAACAACAATTTAAAGGGTTGTCTCCCACCAACAATTGCAAGTTTTGCAAACAATTTGGAAGAGCTTTTGTTGATGAACACTGGTTTATCTGGCTGCTTGCCTCAAGAAATTGGATTTTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAGTGGGTCAATTGCCATATAGTTTAACTGGATTGGCTCAATTGGAGCAATTGAATTTAGCCCACAATTTGTTTAGTGGGAATTTGTATGAAAATATCTGCAGCCTTCCAAAATTGGAGAATTTGACAGTTTCTTACAATTACTTTTGTGAGGAAGAAGGGATTTGCCGGAATCTGACGGCGGAGGGGATAGCTTTTGACGATCGCCGGAATTGTTTGCCGGAAAAGCCGCTTCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGATCGTCATGTGGACTGTTTTGCACATTCTTGCGGCGGCGGCGACGGTGGTTATGGTTCAAGTATTGCGGCGGCTCCGGCCTCGATGCCCATTTCTTCTTCGTCCGTTTCTGCCCCTACCCACTTGTGA 1236 45.15 MSSFSFSFSSFKVLILLLVLLSFLFNGLNANHGEVTTRNSHHHRARSTSLNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPQVCNYFGVYCAPALDDSNLQVVAGIDLNHGDIAGFLPNELGLLRDLALLHLNSNRFCGILPQSLSNLSLLFELDLSNNRFVGPFPSVVLQLPKLTYLDLRFNEFEGSIPPEIFDISLDAIFINSNRFTNIIPQNISGKSASVIVFANNNLKGCLPPTIASFANNLEELLLMNTGLSGCLPQEIGFLYKLKVLDVSFNKLVGQLPYSLTGLAQLEQLNLAHNLFSGNLYENICSLPKLENLTVSYNYFCEEEGICRNLTAEGIAFDDRRNCLPEKPLQRSKKECSAVVDRHVDCFAHSCGGGDGGYGSSIAAAPASMPISSSSVSAPTHL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32794399 32795790 + Sed0002905.1 Sed05g1943 714569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1943 411 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 394 IPR051582 -
Sed05g1943 411 FunFam Leucine-rich repeat extensin-like protein 1 58 219 - -
Sed05g1943 411 SUPERFAMILY L domain-like 57 331 - -
Sed05g1943 411 Pfam Leucine rich repeat 246 304 IPR001611 GO:0005515(InterPro)
Sed05g1943 411 Pfam Leucine rich repeat 128 185 IPR001611 GO:0005515(InterPro)
Sed05g1943 411 Gene3D Ribonuclease Inhibitor 223 345 IPR032675 -
Sed05g1943 411 Gene3D Ribonuclease Inhibitor 56 222 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1943 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1943 Sed-Chr5:32794399 Sed12g0961 Sed-Chr12:5979910 2.20E-50 dispersed
Sed05g1943 Sed-Chr5:32794399 Sed02g1338 Sed-Chr2:49718184 2.40E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g277 . . . . . . . . . . . . . . Sed05g1943 . . Bhi05g01965 Tan02g0208 Cmetu01g0388 Lac12g0736 Hepe02g0129 . . . . . . . . . . . . Cone12ag1471 . . . Cme01g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01698 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1856 . 53 261 Leucine-rich Repeat extension Gene Families AT1G62440 65.7 1.1e-53 209.5
Sed10g1400 . 67 412 Leucine-rich Repeat extension Gene Families AT1G62440 65.0 2.8e-49 194.9
Sed02g1338 . 35 369 Leucine-rich Repeat extension Gene Families AT1G62440 60.3 3.1e-48 191.4
Sed12g0961 . 69 394 Leucine-rich Repeat extension Gene Families AT1G62440 61.8 6.8e-48 190.3
Sed01g2625 . 37 410 Leucine-rich Repeat extension Gene Families AT1G62440 58.5 2.2e-46 185.3
Sed11g0071 . 65 233 Leucine-rich Repeat extension Gene Families AT1G62440 69.8 3.3e-42 171.4
Sed05g1943 . 51 380 Leucine-rich Repeat extension Gene Families AT1G62440 54.2 4.4e-39 161.0
Sed12g1856 . 24 403 Leucine-rich Repeat extension Gene Families AT4G13340 79.8 5.4e-82 303.5
Sed11g0071 . 30 412 Leucine-rich Repeat extension Gene Families AT4G13340 74.7 1.1e-66 252.7
Sed10g1400 . 39 415 Leucine-rich Repeat extension Gene Families AT4G13340 71.2 8.6e-64 243.0
Sed12g0961 . 69 396 Leucine-rich Repeat extension Gene Families AT4G13340 67.5 1.5e-52 205.7
Sed02g1338 . 35 368 Leucine-rich Repeat extension Gene Families AT4G13340 65.8 6.4e-51 200.3
Sed01g2625 . 21 217 Leucine-rich Repeat extension Gene Families AT4G13340 65.3 4.9e-43 174.1
Sed05g1943 . 51 381 Leucine-rich Repeat extension Gene Families AT4G13340 59.6 3.0e-40 164.9
Sed09g0043 . 21 227 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 2.5e-39 161.8
Sed12g1856 . 26 404 Leucine-rich Repeat extension Gene Families AT3G24480 78.2 3.0e-86 317.0
Sed10g1400 . 42 417 Leucine-rich Repeat extension Gene Families AT3G24480 75.3 5.6e-80 296.2
Sed11g0071 . 38 412 Leucine-rich Repeat extension Gene Families AT3G24480 74.3 1.0e-73 275.4
Sed12g0961 . 69 396 Leucine-rich Repeat extension Gene Families AT3G24480 64.1 1.1e-51 202.2
Sed02g1338 . 29 371 Leucine-rich Repeat extension Gene Families AT3G24480 61.9 1.9e-51 201.4
Sed01g2625 . 23 217 Leucine-rich Repeat extension Gene Families AT3G24480 69.0 9.6e-48 189.1
Sed05g1943 . 51 381 Leucine-rich Repeat extension Gene Families AT3G24480 56.6 3.0e-41 167.5
Sed09g0043 . 21 421 Leucine-rich Repeat extension Gene Families AT3G24480 55.0 2.5e-40 164.5
Sed12g0961 . 66 395 Leucine-rich Repeat extension Gene Families AT3G22800 71.9 3.8e-70 263.5
Sed02g1338 . 10 369 Leucine-rich Repeat extension Gene Families AT3G22800 66.8 3.0e-67 253.8
Sed12g1856 . 63 387 Leucine-rich Repeat extension Gene Families AT3G22800 67.6 5.2e-51 199.9
Sed05g1943 . 51 380 Leucine-rich Repeat extension Gene Families AT3G22800 65.0 1.5e-50 198.4
Sed10g1400 . 53 413 Leucine-rich Repeat extension Gene Families AT5G25550 58.8 1.1e-39 162.2
Sed12g0961 . 69 395 Leucine-rich Repeat extension Gene Families AT5G25550 58.1 1.9e-39 161.4
Sed12g1856 . 37 399 Leucine-rich Repeat extension Gene Families AT5G25550 52.7 1.6e-38 158.3
Sed11g0071 . 51 231 Leucine-rich Repeat extension Gene Families AT5G25550 70.2 1.8e-37 154.8
Sed02g1338 . 9 361 Leucine-rich Repeat extension Gene Families AT5G25550 53.8 2.3e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28