Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1946 ATGGGTGGTTGTGTCTCTAGCAGTCAAAGCAATGGGGAATCAGTTTCTTCCTCACGTATGGGAATTGGATTTCGAGGTCGAAAGGGAACGAAAAGAACATTCTCGGACCATGATTATGCTCTTCAGAATCTTCCTTCTGCTCCCAACAGGATCTTCATGAATGGAGAAAGTCATTCTTCTTGCATTTTTACTCAACAAGGTAGAAAGGGCATAAACCAAGATGCCATGGTTGTGTGGGAAGATTTCATGTCGGAGGACACGATCTTTTGCGGTGTGTTCGATGGTCATGGACCTTACGGGCATCTCGTTGCTCGAAAAGTGAGGGACACATTGCCTATAAAGTTGCTGTCTTTCTTCCACTCTTCTCAGTTGAAGCAAAATGACTCTGGTAAGACCTGTTTCCAGAGGAATTTGAAGACACCTCTAGATTGTGATGATTCCAAGAAGGAAAGTTCTGTCGAGGACTTGCAAAATTTGGTATGGAGAGACGCATTTTTGAACTCATATAAAGCTATGGATAAAGAGTTGAGATCACATCCTAATCTTGATTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAATTAAACAGGGGTCAAATCTCTTCATGGGCTACATAGGGGACTCGAGAGCAATCCTCGCTTCGACGGATGTGAACGGTTCGACCGTTGCGGTTCAATTGACTGTAGATCTTAAACCAGATTTGCCAAAAGCTGAAAGAATAAAAAGGTGTAAAGGCAGGGTCTTTGCATTGCAAGATGAACCTGAAGTGCCAAGGGTATGGTTACCTTTTGATGATGCGCCCGGTTTAGCAATGGCTCGAGCATTTGGCGATTTCTGTTTGAAAGAATACGGAGTTATCTCTATACCAGAATTCTCTCATCAAACCCTCACCGATGCTGATCAATTCATCGTTCTTGCATCAGATGGCGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCTCCGCCCCCACTCGCTCGTCTGCTGCGAGATCCGTGGTTCACTCTGCTGCTCGTGAATGGAAAGTCAAATACCCCACCTCAAAAATGGATGACTGTGCTGTTGTCTGCTTATTTTTGGACGGGAGGATGGACTCCGAATCCGACTGCGATGAACATGGCTTTTCATCTGCAACGTTACCGAGTAGTCATTCGGGTACTGCTGCCGAATCTGATGAAGGCCAGAGGTCTGAGCCATGCTTGCAAAGGAACAACACTGTCAGATCATCCGAAGAAAACAATGCTTTTGTAGGATTACCCGTCGACGACGAGGAGACTGGCAATGCTGTACCAGCAGAAGATCAAAACTGGTCGGGTTTGGACGGAGTAATGCGAGTGAACTCGATTGTTCAACTTCCTAGATTCTCTGAAGAAAGGCCAGTGTCATAA 1401 45.4 MGGCVSSSQSNGESVSSSRMGIGFRGRKGTKRTFSDHDYALQNLPSAPNRIFMNGESHSSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSFFHSSQLKQNDSGKTCFQRNLKTPLDCDDSKKESSVEDLQNLVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIIKQGSNLFMGYIGDSRAILASTDVNGSTVAVQLTVDLKPDLPKAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHQTLTDADQFIVLASDGVWDVLSNEEVVDIVSSAPTRSSAARSVVHSAAREWKVKYPTSKMDDCAVVCLFLDGRMDSESDCDEHGFSSATLPSSHSGTAAESDEGQRSEPCLQRNNTVRSSEENNAFVGLPVDDEETGNAVPAEDQNWSGLDGVMRVNSIVQLPRFSEERPVS 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32826486 32829675 - Sed0017965.1 Sed05g1946 714572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1946 466 FunFam probable protein phosphatase 2C 52 50 367 - -
Sed05g1946 466 ProSiteProfiles PPM-type phosphatase domain profile. 59 364 IPR001932 -
Sed05g1946 466 PANTHER PROTEIN PHOSPHATASE 60 363 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g1946 466 SMART PP2C_4 47 362 IPR001932 -
Sed05g1946 466 MobiDBLite consensus disorder prediction 374 440 - -
Sed05g1946 466 Gene3D - 49 366 IPR036457 -
Sed05g1946 466 SUPERFAMILY PP2C-like 48 366 IPR036457 -
Sed05g1946 466 MobiDBLite consensus disorder prediction 1 29 - -
Sed05g1946 466 Pfam Protein phosphatase 2C 152 336 IPR001932 -
Sed05g1946 466 CDD PP2Cc 59 364 IPR001932 -
Sed05g1946 466 MobiDBLite consensus disorder prediction 1 18 - -
Sed05g1946 466 MobiDBLite consensus disorder prediction 377 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3343 Sed-Chr4:43582739 Sed05g1946 Sed-Chr5:32826486 8.20E-196 dispersed
Sed05g1946 Sed-Chr5:32826486 Sed05g3132 Sed-Chr5:41400091 3.30E-167 dispersed
Sed05g1946 Sed-Chr5:32826486 Sed05g1947 Sed-Chr5:32826486 2.00E-273 tandem
Sed04g3342 Sed-Chr4:43582739 Sed05g1946 Sed-Chr5:32826486 8.20E-196 wgd
Sed05g1946 Sed-Chr5:32826486 Sed05g3131 Sed-Chr5:41400091 1.10E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1946 - - - 0.0