Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1951 ATGGCGGACAGTAAGAAAAAAGGGAAATCGAAGATGGTAATCGAAAACCAAATCGAGCAATCGAAATCCCCTGTGATGAAGATTGAAAAGGGGCAACAATGGAAGCCAGTTTTAGATGATGCTTTCTTGTCCAAAAGACCTCTCAAAAAATTCTGCAGTTCAGACTTTCAAATCCCATCTTCAAAAATCCAATTTCCTTTCGATTTTGAAGCATCTCAACAATCAACAGCAACAACAACAGCCCAATTCAATTCTCACCATCCAATTTCACCTTCTTTTCCTTTTCCGGCAATTGGGTCGTCGGAGAATCAGATGATTTCTTTCAATTCGAATCAGCAACAACAGGGGCTTGGATTACTACCGTATTTCATCGGCGGCAGCGATCCGGTATCGACGCAGCAGAGACTTTTCAAGTATTGGAGCGATGCTTTTCATTTGAGTCCGAGAGGAAGAGCTATGATGATGAGCAGATTAGGCCCTGATGGCGGCAACAATTTGTTTAATCCGCCATTGCAGCCAATTAGTGCTACCAAGCTTTACAGGGGAGTTCGACAGCGGCATTGGGGGAAATGGGTGGCGGAAATTCGTCTCCCTCGTAATCGTACTCGCCTATGGCTCGGCACGTTCGACACCGCCGAAGACGCCGCCATGGCTTACGATCGCGAGGCCTTCAAATTGCGAGGCGAAAATGCAAGGCTTAATTTCCCTGATAGGTTCCTCAACAAAGACACTCCAAAAACAGAGTATATTGATTCAAAAACAGAGGAACCAAAAACAGAGGAGCCAAAAGCAGAGAGTCCCATTGCTCCTCCGCCGCTGCCGGAGGAGCAGCCTGACGGAGAATTTCCGGCCAGCGGCGACGGTTCGGAAGTTTCATCGGAGATGGGATGGGGAGAAATGGAAGAGGCTTGGTTCAATTCGATTCCGGCGGGTTGGGGTCCGGGAAGCCCTGTTTGGGATCATTTAGATGCAACAAACAATTTGGTTCTACATTCACAAATCCCATTTGGATCTTCATATCAACAAGAGATCAACCATTACGATGATAACCAGAACAAGCAAGACACCTCCGAATCGGCTTCGGCATCGGTATCGGTATCGGTATCGGCATCGTCGTCGTCTTCTTCTGCTCCAATGAAGCTCTTCTTATGGAAAGATCAAAATTGA 1167 46.79 MADSKKKGKSKMVIENQIEQSKSPVMKIEKGQQWKPVLDDAFLSKRPLKKFCSSDFQIPSSKIQFPFDFEASQQSTATTTAQFNSHHPISPSFPFPAIGSSENQMISFNSNQQQQGLGLLPYFIGGSDPVSTQQRLFKYWSDAFHLSPRGRAMMMSRLGPDGGNNLFNPPLQPISATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPDRFLNKDTPKTEYIDSKTEEPKTEEPKAESPIAPPPLPEEQPDGEFPASGDGSEVSSEMGWGEMEEAWFNSIPAGWGPGSPVWDHLDATNNLVLHSQIPFGSSYQQEINHYDDNQNKQDTSESASASVSVSVSASSSSSSAPMKLFLWKDQN 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32866141 32867875 + Sed0025633.1 Sed05g1951 714577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1951 388 Pfam AP2 domain 179 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1951 388 MobiDBLite consensus disorder prediction 264 278 - -
Sed05g1951 388 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 32 315 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed05g1951 388 MobiDBLite consensus disorder prediction 349 388 - -
Sed05g1951 388 FunFam Ethylene-responsive transcription factor 2 178 237 - -
Sed05g1951 388 MobiDBLite consensus disorder prediction 354 382 - -
Sed05g1951 388 MobiDBLite consensus disorder prediction 239 263 - -
Sed05g1951 388 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1951 388 PRINTS Ethylene responsive element binding protein signature 202 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1951 388 Gene3D AP2/ERF domain 179 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1951 388 SUPERFAMILY DNA-binding domain 179 238 IPR016177 GO:0003677(InterPro)
Sed05g1951 388 ProSiteProfiles AP2/ERF domain profile. 179 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1951 388 MobiDBLite consensus disorder prediction 236 293 - -
Sed05g1951 388 CDD AP2 178 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1951 388 SMART rav1_2 179 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0665 Sed-Chr1:4880484 Sed05g1951 Sed-Chr5:32866141 3.40E-44 dispersed
Sed05g1951 Sed-Chr5:32866141 Sed12g1433 Sed-Chr12:11968969 2.50E-27 dispersed
Sed05g1951 Sed-Chr5:32866141 Sed05g3138 Sed-Chr5:41461014 5.90E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38564 PF00847 AP2 2.50E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1951 - - - 0.0