Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1952 ATGCAGCTCCGCCGTGGATATGCTACATTTTCGTTTTTTGTGTACTTGTGGAGTGTGACAATGTTGGTGAATATGGTGGGCATGGGAAAGTTTCTTCTTGTTGAATCCGCTCCGACTCGAAACCGTTGGCTCCCCGCTACCGCCACTTGGTACGGTAGCCCGGAAGGTGACGGCAGCAGTGGTGGGGCATGTGGATATGGTAGTTTGGTGGATGTGAAGCCATTCAAGGCAAGAGTAGGGGCGGTGAGCCCGGTCCTTTTCAAGAATGGCGAAGGATGCGGTGCGTGTTATAAGGTTATATGTTTGGACCGAACCATATGCTCTAAACGAGCCGTTACAATCATAGTCACAGACGAATGTCCTGGTGGATACTGTGCTAATGGTAACACTCATTTTGACTTGAGTGGGGCCGCCTTCGGTCGTATGGCTGTTGCTGGCGCTCATAGTCGTCTTCGTGACCGAGGCGAACTCTCTGTCCTTTACCGACGGACTCCATGTTTGTATCGTGGGAAGAACATAGCCTTCAAAGTGAATGAAGGTTCTACAGATCATTGGCTTTCGCTTTTGGTGGTGTTTGAAGATGGAGATGGAGATATTGGCTCAATGCAAATCAAACAAGCAAATTCAAACGAGTGGATGGAAATGGCACACGTGTGGGGCGCAACATGGTGCATGAATGGAGGGCCTTTAAAGGGTCCATTTTCAGTGAAGTTAACCACATTATCCACTGCCAAAACTCTCTCAGCCAGAGATGTTATCCCTAGAAATTGGTCTCCAAAAGCTACTTATACTTCTAGATTGAACTTCTTATAA 813 47.72 MQLRRGYATFSFFVYLWSVTMLVNMVGMGKFLLVESAPTRNRWLPATATWYGSPEGDGSSGGACGYGSLVDVKPFKARVGAVSPVLFKNGEGCGACYKVICLDRTICSKRAVTIIVTDECPGGYCANGNTHFDLSGAAFGRMAVAGAHSRLRDRGELSVLYRRTPCLYRGKNIAFKVNEGSTDHWLSLLVVFEDGDGDIGSMQIKQANSNEWMEMAHVWGATWCMNGGPLKGPFSVKLTTLSTAKTLSARDVIPRNWSPKATYTSRLNFL 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32873225 32876212 - Sed0002180.1 Sed05g1952 714578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1952 270 PANTHER EXPANSIN-B3 24 269 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Sed05g1952 270 Pfam Expansin C-terminal domain 173 254 IPR007117 -
Sed05g1952 270 FunFam Expansin B3 33 167 - -
Sed05g1952 270 FunFam Beta-expansin 3 168 270 - -
Sed05g1952 270 SMART dpbb_1 79 161 IPR007112 -
Sed05g1952 270 Gene3D - 33 166 IPR036908 -
Sed05g1952 270 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Sed05g1952 270 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576(InterPro)
Sed05g1952 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576(InterPro)
Sed05g1952 270 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576(InterPro)
Sed05g1952 270 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576(InterPro)
Sed05g1952 270 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576(InterPro)
Sed05g1952 270 SUPERFAMILY Barwin-like endoglucanases 33 170 IPR036908 -
Sed05g1952 270 PRINTS Major pollen allergen Lol pI signature 241 258 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g1952 270 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g1952 270 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g1952 270 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g1952 270 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g1952 270 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g1952 270 Pfam Lytic transglycolase 81 145 IPR009009 -
Sed05g1952 270 SUPERFAMILY PHL pollen allergen 171 265 IPR036749 -
Sed05g1952 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 265 IPR007117 -
Sed05g1952 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 171 IPR007112 -
Sed05g1952 270 CDD DPBB_EXPB_N 43 166 - -
Sed05g1952 270 Gene3D - 168 270 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1952 Sed-Chr5:32873225 Sed14g0361 Sed-Chr14:3752296 1.70E-22 dispersed
Sed02g1811 Sed-Chr2:52702218 Sed05g1952 Sed-Chr5:32873225 1.40E-64 transposed
Sed04g0699 Sed-Chr4:5651659 Sed05g1952 Sed-Chr5:32873225 1.00E-62 transposed
Sed04g0848 Sed-Chr4:7374194 Sed05g1952 Sed-Chr5:32873225 4.40E-55 transposed
Sed05g1952 Sed-Chr5:32873225 Sed05g3141 Sed-Chr5:41476230 2.70E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1952 K20628 - csv:101205324 454.136