Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1961 ATGCCATCTTCTTCCCCAAATCTCTTCCACACTGTAATTCCCATTCTCTTCTCCATTTCCATCACAGTCTCAGCCTCAGAGTTCATCTTCAACACCAATTTCTCTTCCACAAACACTTTACTCTTCGGCAACGCCACCATTGATGCTTCCATTCTTGTTCTAACAAAAAATTCCCCTTTCACAATCGGCCGTGCCCTTTACCCTTTCAAAATCCCAACCCATTTCTCGAATTCATCGTTCTCGTTCGCATCTTCCTTCATCTTCTCCGTTTCCCCTCAGCCAAATCTCCTCCCCGGCCATGGATTCGCCTTTCTCTTCACACCCTTTACCGGAATCGACGGCTCGAGCTCGGCCCAGCATTTGGGGCTTTTCAATTTCACCAATAATGGAAACCCTAATAACCATGTCTTCGCTGTCGAGTTCGATTCGTTTCGAAATCAAGAGTTTAATGATGTGAATGATAACCATGTGGGTGTTGATTTGAATTCTCTTGAATCTGCTGCCTCTTTTACTGCAGGGTTTTGGAGTGGAGATGGAGATGGAGATTTCAAGGAGTTGAGGATTAACAATGGAGAAACTTATCAGGTTTGGATTGATTGTGTTAATTCTTTGGTTAATGTTACTATGGCTCAAGTTGGTGTGGAAAGGCCTACAAAGCCTTTGATATCTCTGTTTGTGAATTTTTCTGAATTGCTTTTGGATGAGATGTATGTAGGATTTACAGCAGCTACAGGGCAATTAGTTCAAAGTCATAAGATATTGTCTTGGAGTTTTAGTACTACCAACTTGTCAATTGGTGATGCTTTAATTATTGATAATCTGCCATCTTTTGCTCCTCAAAATGACTCTAGTTTTAGCTTAATTGGGGGGTTAGTTGTGGGTGGGGCTGGATTTTTTATTATCTGTTGTGTTGTAATCTATGTTGTTGTGATTATCAAAAGGAGGGGAAGAAAGAAACAAAAGGGTGATGAGATTGAAGATTGGGAGTTGGAATATTGGCCTCATAGATTTGATTATGAAGATGTCTATGCGGCAACTGATGGGTTCTCGGAAGCTAATGTGATTGGCTACGGGCGAAATGGGAAGGTCTATAAAGGGACATTAGGGAGATCGAGAGTTGCGGTCAAGAAGATCTCGGTTGAAGCCGACTGTGGAATGAGGGAGTTCGTGGCAGAGATTTCGAGCCTCGGAAGGTTAAAACATAGGAATCTTGTCAAACTTATAGGATGGTGTAAGAAAGAGACTGGAAGTTTAATCTTAATGTATGAATACATGGAAAATGGAAGTTTAGACAAGATGTTATTTGAGTGTGATGAGAATACAATCCTGAGTTGGGAGAATAGGATGAAGGTTTTGAGAGATGTAGCCACAGGGCTGCTATATCTCCACCAAGGTTGGGATTACAAAGTTCTACATAGAGACATAAAGGCAAACAATGTGCTACTCGACAAGGACATGACCGCAAAGTTAGGAGACTTCGGGTTGGCTCGAATGCAACCCCACGAGCAAACGGCGGACACCACACGAGTGATGGGAACCGTCGGGTACATGGCACCAGAGGTGGTTAGGACAGGGCGAGTATCGGTCCAAGCCGACGTGTTCGGATTCGGAGTGTTGGTTTTGGAGGTGGTGTGTGGGAGGAGAGCAATAGAAGAAGGGAAGCCATGGTTGATTGATTGGGTAAGAGGGGTAATGGAGAGAAATGAGGTTACATTTGCAGTCGATGAAAGATTGAAAGTTGAAGGTCATGAGCAAATGGAGAGAATGGTTTGTTTGGGATTATTATGTACACAACCTGAGCCTGGTGCAAGGCTAACAATGCAGCAAGTTGTGAACATTTTGGGGGAGAGAAATGGAGGTAATTCAAATGAAGGATTATTAAATAGATTAAGATCAAGAACAATACTGTCTGAGATATACCAAGGCAACAGTTCTCAGCTAAATCATCCAACGTTGGAAGAAATCAAAGCATCTTCTTGTTCAACATCACTTGTTGAATCCGACATTTTAAAGAGTGGTCGCTAA 2025 42.52 MPSSSPNLFHTVIPILFSISITVSASEFIFNTNFSSTNTLLFGNATIDASILVLTKNSPFTIGRALYPFKIPTHFSNSSFSFASSFIFSVSPQPNLLPGHGFAFLFTPFTGIDGSSSAQHLGLFNFTNNGNPNNHVFAVEFDSFRNQEFNDVNDNHVGVDLNSLESAASFTAGFWSGDGDGDFKELRINNGETYQVWIDCVNSLVNVTMAQVGVERPTKPLISLFVNFSELLLDEMYVGFTAATGQLVQSHKILSWSFSTTNLSIGDALIIDNLPSFAPQNDSSFSLIGGLVVGGAGFFIICCVVIYVVVIIKRRGRKKQKGDEIEDWELEYWPHRFDYEDVYAATDGFSEANVIGYGRNGKVYKGTLGRSRVAVKKISVEADCGMREFVAEISSLGRLKHRNLVKLIGWCKKETGSLILMYEYMENGSLDKMLFECDENTILSWENRMKVLRDVATGLLYLHQGWDYKVLHRDIKANNVLLDKDMTAKLGDFGLARMQPHEQTADTTRVMGTVGYMAPEVVRTGRVSVQADVFGFGVLVLEVVCGRRAIEEGKPWLIDWVRGVMERNEVTFAVDERLKVEGHEQMERMVCLGLLCTQPEPGARLTMQQVVNILGERNGGNSNEGLLNRLRSRTILSEIYQGNSSQLNHPTLEEIKASSCSTSLVESDILKSGR 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32926730 32929248 + Sed0014269.1 Sed05g1961 714587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1961 674 Gene3D Phosphorylase Kinase; domain 1 334 424 - -
Sed05g1961 674 Pfam Legume lectin domain 27 262 IPR001220 GO:0030246(InterPro)
Sed05g1961 674 FunFam L-type lectin-domain containing receptor kinase S.4 425 624 - -
Sed05g1961 674 Gene3D Transferase(Phosphotransferase) domain 1 425 627 - -
Sed05g1961 674 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 263 IPR013320 -
Sed05g1961 674 SMART serkin_6 349 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1961 674 SUPERFAMILY Protein kinase-like (PK-like) 324 614 IPR011009 -
Sed05g1961 674 ProSiteProfiles Protein kinase domain profile. 349 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1961 674 PANTHER - 27 616 IPR050528 GO:0005886(PANTHER)
Sed05g1961 674 Gene3D - 24 270 - -
Sed05g1961 674 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 309 424 - -
Sed05g1961 674 Pfam Protein kinase domain 351 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1961 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1961 674 FunFam L-type lectin-domain containing receptor kinase V.9 24 268 - -
Sed05g1961 674 CDD lectin_legume_LecRK_Arcelin_ConA 27 261 IPR001220 GO:0030246(InterPro)
Sed05g1961 674 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1961 Sed-Chr5:32926730 Sed08g2265 Sed-Chr8:36246975 9.30E-195 dispersed
Sed04g3367 Sed-Chr4:43710659 Sed05g1961 Sed-Chr5:32926730 7.40E-301 wgd
Sed05g1961 Sed-Chr5:32926730 Sed08g2277 Sed-Chr8:36327592 2.20E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79192 PF00069 Pkinase 5.10E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1961 - - - 0.0