Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1968 ATGGGTTGGAGGAGTTCTCCGAGGAATGGCGATTTGAGGATCTATGGGCAGGTTTTAGTTGGATTCTTTATCTGTGCTGCACAAGTTCTTTTCGGAATTACCAATCCGAGCGATTTTGCTGCTATTAGTAGCTTACATACCGCATTGGGGCTCCCTAGTCTTCCTGGATGGGGCACTGGGCAAGACCCTTGTGGAGATGCGTGGCAGGGTGTCGTATGCGATGATTCAAACATCATTAAAATAATTGTTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAGCTTGGGAATGTTTTCTTCTATCCAAACCATTGATTTAAGTAACAATCAAATAGGGGGAAGTATTCCATCCAGTTTACCCGTTACCTTGCAGAACTTTTTTCTTTCAGCTAATGAGTTTACTGGAAGCATTCCAAGTTCATTATCATCTTTGATTCAACTGTCAGCCTTGTCGTTGAATGATAACAAATTAAGTGGAGAAATACCAGATTCTTTTCAAGCCATTACTCAATTGGTCAATTTGGTCTTATCGAGTAACAACTTGAGTGGGCCACTGCCTCCATCTGTTACCAATTTATTGGCATTGACCACACTGCATTTGCAGAATAATCAGCTTTCAGGGACCCTTGATGTATTAGAAGACCTTCCGCTAAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGACGTTGCTGAATATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCTTCCGTTTCTCTGGCGCCTCTTCCTTCTGTATCTCCACCAGCACCATCAAAGCCAGGACCAGCGCCGCCAGTTTCTGAAGCACCACCATCTTCTCAACAAAAACCTAAGAAACAGGCCAATGGACCATCCGCAGCGGAGGAGTCAAGCACTGGAAGAAATAAGAAAAGCACCAAGAGGGTTGTTTTGATAACAATTGTAGTTGTATTGTCATTCATAATCTTGGTTTTGGCATGTGTGCTTCTTATGCCAAGGTGCAGAAGGAGAACAGTTGACAGCATTTCCAAGCGACATCATCAGATAGGTGCTTATAAGGGTGAGAGAGCGAATGCCGTAAATGAGGGATCCATACACCATACAACTAATCAGATACCTAAAGTTCCAAAAGAAGCAGTTGTAAGGCCAAAGCAGGAAACTCAAACAGAGGCTCAGAAGGTTCCAAAAGCTGATGGAGAGAAAGAGAGAAACATGCCAAAGCCTAGTGCTATTCCAAAGAAGGATCACCATGAAGTAGGAATGAGCGCACCCGATGTCTATCTAATGCCGCTGCCTCCTCCCCCACCACCTCCCTCTCCACCGCCACCTCCTGTTGAAGAGGTCACTGCCGTGCTCACTGTTCCAGCCAAAGTTCCTCCCTTGAAGCCTCCCACCAAACCTAGAATTACCTCAACTTGTGCCAAATCTTTCACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTATAGGAGAAGGAATGCTAGGGAATGTTTATAGGGCACAACTCCCCAGTGGGAAGCTACTGGCCGTCAAGAAACTGGATAAAAAAGCATTCAGTCAGCAAAAGGATGATGAATTTCTTGAGTTAGTGAATAACATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGTAGTTGTGGAACATTGCAAGATGCACTGCACTCGGACGAGGAGTTCAGAAGGAAACTTTCTTGGAACGCCCGCATTAGAATGGTTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGCCAGCCACCTGTTATTCATAGGAATTTTAAGTCTGCAAATGTACTTCTTGATGATGATCTTTCAGTGCGTCTTTCAGATTGTGGTCTGGCTCCATTAATATCATCAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTAACAGCATACGGTTACGGAGCGCCAGAATTCGAATCAGGAGTTTATACACTTGAGAGTGACGTTTACAGTTTCGGTGTGGTTATGCTGGAACTTTTAACCGGCCGGATGTCTTATGACAGAACAAGGGCCCGAGGGGAGCAATTTCTTGTCAGATGGGCGATTCCGCAGCTTCACGATATAGAGGCATTGACAAACATGGTTGATCCTGCACTCAATGGTCAATACCCCGCCAAACCCTTGTCGTACTTTGCCGATATCATATCCAAATGTGTTCAGTCCGAGCCAGAATTCCGGCCACCAATGTCGATGGTTGTTCAGGACTTGCTCAATATGATAAGGAGAGAACCACATGGCAGTGGTTCAAGTGAAGGTTAA 2346 44.63 MGWRSSPRNGDLRIYGQVLVGFFICAAQVLFGITNPSDFAAISSLHTALGLPSLPGWGTGQDPCGDAWQGVVCDDSNIIKIIVNAANLGGELGDSLGMFSSIQTIDLSNNQIGGSIPSSLPVTLQNFFLSANEFTGSIPSSLSSLIQLSALSLNDNKLSGEIPDSFQAITQLVNLVLSSNNLSGPLPPSVTNLLALTTLHLQNNQLSGTLDVLEDLPLKDLNIENNLFSGPIPETLLNIPNFRKDGNPFNSSVSLAPLPSVSPPAPSKPGPAPPVSEAPPSSQQKPKKQANGPSAAEESSTGRNKKSTKRVVLITIVVVLSFIILVLACVLLMPRCRRRTVDSISKRHHQIGAYKGERANAVNEGSIHHTTNQIPKVPKEAVVRPKQETQTEAQKVPKADGEKERNMPKPSAIPKKDHHEVGMSAPDVYLMPLPPPPPPPSPPPPPVEEVTAVLTVPAKVPPLKPPTKPRITSTCAKSFTIASLQQYTNSFSQENLIGEGMLGNVYRAQLPSGKLLAVKKLDKKAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSCGTLQDALHSDEEFRRKLSWNARIRMVLGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRLSDCGLAPLISSGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRARGEQFLVRWAIPQLHDIEALTNMVDPALNGQYPAKPLSYFADIISKCVQSEPEFRPPMSMVVQDLLNMIRREPHGSGSSEG 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32996184 33005263 + Sed0010641.2 Sed05g1968 714594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1968 781 SUPERFAMILY Protein kinase-like (PK-like) 466 765 IPR011009 -
Sed05g1968 781 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 35 260 - -
Sed05g1968 781 MobiDBLite consensus disorder prediction 281 301 - -
Sed05g1968 781 ProSiteProfiles Leucine-rich repeat profile. 195 217 IPR001611 GO:0005515(InterPro)
Sed05g1968 781 Gene3D Ribonuclease Inhibitor 37 257 IPR032675 -
Sed05g1968 781 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Sed05g1968 781 Pfam Leucine Rich Repeat 148 167 IPR001611 GO:0005515(InterPro)
Sed05g1968 781 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Sed05g1968 781 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 461 568 - -
Sed05g1968 781 PANTHER LEUCINE RICH REPEAT KINASE 2 76 767 IPR051420 -
Sed05g1968 781 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 569 778 - -
Sed05g1968 781 MobiDBLite consensus disorder prediction 253 306 - -
Sed05g1968 781 SUPERFAMILY L domain-like 50 242 - -
Sed05g1968 781 MobiDBLite consensus disorder prediction 259 280 - -
Sed05g1968 781 Pfam Protein tyrosine and serine/threonine kinase 494 765 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1968 781 MobiDBLite consensus disorder prediction 381 419 - -
Sed05g1968 781 Gene3D Transferase(Phosphotransferase) domain 1 570 773 - -
Sed05g1968 781 Gene3D Phosphorylase Kinase; domain 1 463 568 - -
Sed05g1968 781 ProSiteProfiles Protein kinase domain profile. 491 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1968 Sed-Chr5:32996184 Sed14g1427 Sed-Chr14:22856936 9.80E-148 dispersed
Sed05g1967 Sed-Chr5:32996184 Sed05g1968 Sed-Chr5:32996184 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79194 PF07714 PK_Tyr_Ser-Thr 3.40E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1968 - - - 0.0