Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1975 ATGACGTTTTTCTCCTTCTTCTCCAGAGCTTCAAGAGCCTTTCATGGCTCCCCTGCATACTCAAAGCTTCTGCTCGTCAGCACCCTCAGTAGCGGAGGTCTATTGGCATACGCAGATTCACAACCAGGCGTTGGCAATCCTAATGAGGAGTGCCCTAAAAAGAGAGTTCTGGTGCTAGGAACAGGATGGGCTGGTACCAGTTTCCTCAAGGATCTGGATGCTTCAAAGTATGATGTTCAGGTTGTTTCGCCTCAGAATTATTTCTCATTTACTCCTTTGTTGCCTAGTGTTACATGTGGATCAGTTGAAGCGCGAAGCATCGTTGAACCGATTCGAAACATTGTGAAGAAGAGAAAAGATGAAATTAAATTCTGGGAAGCTGAATGCACAAAGATTGACGCTGAAAACAAAAAGGTTTTCTGTCGGTCTAATGTTGGCACTAACTTGGTTGGAAATAGGGAGTTTGCTTTAGAATATGACTATTTGGTAATAGCAATGGGAGCACAAGTTAATACTTTTAATACTCCCGGTGTCAAGGAGAACTGCCATTTTCTCAAGGAAGTGAAAGATGCTCAGAAGATCCGCAGAAGTGTGATCGATTGCTTTGAAATGTCTGTGATTCCTAGTCTAGATGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTCATTGTCGGTGGGGGACCCACTGGGGTAGAATTTGCTGCAGAGCTTCATGACTTTTTCGAAGAAGATTTAGTAAATTTATACCCTTCGGTTAAAGATCTGGTGAAAATTTCAGTGATTCAATCAGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCTGAACAAAAGTTCCAAAGAGATGGTATTGATGTGCACATGGGATGTCGAGTTATCAGTGTATCTGATAAGGAAATTACGATGAAGGTGAAATCAACTGGAGAAGTCTGTTCATTACCGCATGGACTAATTGTGTGGTCTACGGGCATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGGCAGGGTAGTAGACGCATTCTTGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCGCAGCCATATTTAAAGCTGCAGACAAAGATAACTCTGGAACCCTGACAGTTGCAGAATTTCAAGATGTTGTAGACGATATCCTCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGCGATGTAAGAGATCTATTAAAAGATTCTCAGGGACATGAGAACGAAGTAGATATTGAAGGATTCAAGTCAGCTCTCTCTCAAGCTGACACGCAGATGAAAAGTCTACCTGCTACTGCACAGGTTGCTGCACAACAAGGTGCGTATCTTTGCAGCTGTTTCAACCGTAGGGAGCATTGCACTGAAAATCCTGAAGGGCCTCGACGTTTTAAGGGTTCTGGGCGTCATCAGTTTCTTCCCTTTCAGTACAAGCACTTTGGACAGTTTGCACCTTTAGGGGGAGAACAAGCTGCTGCAGAACTCCCTGGAGACTGGGTTTCCATGGGTCGCAGCACTCAGTGGCTCTGGTATTCTGTATACGCAAGCAAGCAGGTCAGTTGGCGCACAAGGTATTTAGTGGTATCAGACTGGACACGAAAGTTCATATTCGGCAGAGACTCGAGTGGCATCTAA 1725 43.54 MTFFSFFSRASRAFHGSPAYSKLLLVSTLSSGGLLAYADSQPGVGNPNEECPKKRVLVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPIRNIVKKRKDEIKFWEAECTKIDAENKKVFCRSNVGTNLVGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVKDAQKIRRSVIDCFEMSVIPSLDEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFQRDGIDVHMGCRVISVSDKEITMKVKSTGEVCSLPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVAEFQDVVDDILIRYPQVEIYLRSKHLRDVRDLLKDSQGHENEVDIEGFKSALSQADTQMKSLPATAQVAAQQGAYLCSCFNRREHCTENPEGPRRFKGSGRHQFLPFQYKHFGQFAPLGGEQAAAELPGDWVSMGRSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSGI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33046015 33057066 + Sed0024362.1 Sed05g1975 714601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1975 574 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Sed05g1975 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 573 - -
Sed05g1975 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491(InterPro)
Sed05g1975 574 Pfam NDH2 C-terminal domain 509 570 IPR054585 -
Sed05g1975 574 Gene3D - 424 573 - -
Sed05g1975 574 Gene3D - 46 403 - -
Sed05g1975 574 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Sed05g1975 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 405 - -
Sed05g1975 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Sed05g1975 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Sed05g1975 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Sed05g1975 574 PANTHER NADH DEHYDROGENASE 41 572 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Sed05g1975 574 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Sed05g1975 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509(InterPro)
Sed05g1975 574 SUPERFAMILY EF-hand 329 454 IPR011992 -
Sed05g1975 574 SMART efh_1 380 408 IPR002048 GO:0005509(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1975 Sed-Chr5:33046015 Sed05g3775 Sed-Chr5:45500803 2.20E-72 dispersed
Sed14g1421 Sed-Chr14:22825667 Sed05g1975 Sed-Chr5:33046015 1.80E-68 wgd
Sed05g1975 Sed-Chr5:33046015 Sed05g3116 Sed-Chr5:41306384 3.90E-226 wgd
Sed05g1975 Sed-Chr5:33046015 Sed08g2309 Sed-Chr8:36489020 3.10E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1975 K03885 - csv:101203130 1051.97