Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2006 ATGAAGCTCTTTCATTGTCTTGTCCTTCTAATTGTATGTCTTTTAGGACTTGCTAGCTCAAGCCAAGCTAAACTCGAGCTTGGGTACTACGCAAAAAGCTGCCCTCAGGCCGAGAAAATCATCTATGACTTAGTCCACAAGAGCATTCCCAAGGTTCCCACCTTGGCCGCTGCCTTCATTCGTATGCATTTCCATGATTGCTTTGTTCGGGGTTGCGACGCATCGGTGCTTTTGAACTCGACTGCGAACAACCCGAGTGAGAAGGTGTCGCCACCGAATCTAACATTGAGAGGCTTCGACTTCCTCGACAAAATCAAGAAGGTTCTAGAAGCTGAGTGCCCCGGAATCGTCTCGTGTGCTGACATTCTTTCTCTAGTTGCAAGAGACTCCGTCGTTGCCATAGGCGGTCCATTCTGGAAGGTTCCAACCGGAAGAAGAGACGGCGTTATCTCAAGATCGGCCGAAGCTTTGGCCAACATTCCTCCGCCGTTTGGGAACTTGTCAACTCTTCAACGGCAGTTTGCCAACCAGGGCCTTGATCTCAAAGACTTGGTTTTGCTTTCCGGAGCTCACACGATCGGAATATCCCACTGCTCATCATTCACAAGGCGTCTATACAACTTCACGGGCGTGGGGGACCAAGACCCCTCACTAGACAGCGAGTACGCCGCAAATCTAAAGGCAAGGAAATGCAAAACCATAACCTCCAACAACATTGTCGAAATGGACCCCGGAAGTTTCCGAACCTTCGACCTTAGCTACTACTCGCTCCTCCTCAAGCGACGCGGGCTGTTCCAGTCCGACGCCGCTCTCACCACGAGCCCGGTCACCAAGGCCTTGATCAAGGACCTGCTCAGTGGCTCGGTTGAGAATTTCTTTGTCCAGTTTGGGTTGGCCATGGAGAAGATGGGTCGGATCGGGGCCAAGACTGGCACCGAGGGCGAGATCCGCAAGCATTGTGCTGTTGTTAATGCCTGA 978 51.84 MKLFHCLVLLIVCLLGLASSSQAKLELGYYAKSCPQAEKIIYDLVHKSIPKVPTLAAAFIRMHFHDCFVRGCDASVLLNSTANNPSEKVSPPNLTLRGFDFLDKIKKVLEAECPGIVSCADILSLVARDSVVAIGGPFWKVPTGRRDGVISRSAEALANIPPPFGNLSTLQRQFANQGLDLKDLVLLSGAHTIGISHCSSFTRRLYNFTGVGDQDPSLDSEYAANLKARKCKTITSNNIVEMDPGSFRTFDLSYYSLLLKRRGLFQSDAALTTSPVTKALIKDLLSGSVENFFVQFGLAMEKMGRIGAKTGTEGEIRKHCAVVNA 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33317271 33319776 - Sed0004802.1 Sed05g2006 714632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2006 325 FunFam Peroxidase 161 303 - -
Sed05g2006 325 Pfam Peroxidase 45 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 SUPERFAMILY Heme-dependent peroxidases 25 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Sed05g2006 325 FunFam Peroxidase 28 173 - -
Sed05g2006 325 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 Gene3D - 29 324 - -
Sed05g2006 325 Gene3D Peroxidase, domain 2 161 303 - -
Sed05g2006 325 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g2006 325 PANTHER PEROXIDASE 25-RELATED 14 320 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2006 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0125 Sed-Chr1:1117013 Sed05g2006 Sed-Chr5:33317271 1.90E-132 dispersed
Sed05g2006 Sed-Chr5:33317271 Sed09g0321 Sed-Chr9:2909361 6.00E-83 dispersed
Sed10g0374 Sed-Chr10:2256507 Sed05g2006 Sed-Chr5:33317271 4.80E-64 wgd
Sed04g3293 Sed-Chr4:43300867 Sed05g2006 Sed-Chr5:33317271 2.40E-80 wgd
Sed05g2006 Sed-Chr5:33317271 Sed05g3076 Sed-Chr5:41042886 2.10E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2006 K00430 - csv:101213629 483.796