Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2008 | ATGTCTGAATTCAACGCGCCGATTCCAACTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTCCAAGGATTGAAGAAGGAATTTAGTTATAACAAGATACTTAAGGACCTGAAGAAAGAATTTTGCTGCAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTACAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGTATTGCGAAGAAGGAAAATATCAAGATGCACGGTTTCTGA | 342 | 43.86 | MSEFNAPIPTAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIAKKENIKMHGF | 113 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33341144 | 33344120 | + | Sed0026497.1 | Sed05g2008 | 714634 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2008 | 113 | NCBIfam | translation initiation factor SUI1 | 9 | 113 | IPR005874 | GO:0003743(InterPro) | |
Sed05g2008 | 113 | CDD | eIF1_SUI1 | 29 | 112 | IPR005874 | GO:0003743(InterPro) | |
Sed05g2008 | 113 | Pfam | Translation initiation factor SUI1 | 28 | 102 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed05g2008 | 113 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 4 | 113 | - | GO:0003723(PANTHER) | |
Sed05g2008 | 113 | PIRSF | Transl_init_SUI1_Euk | 2 | 113 | IPR005874 | GO:0003743(InterPro) | |
Sed05g2008 | 113 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 31 | 101 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed05g2008 | 113 | SUPERFAMILY | eIF1-like | 7 | 113 | IPR036877 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed05g2008 | 113 | FunFam | Eukaryotic translation initiation factor SUI1 | 2 | 113 | - | - | |
Sed05g2008 | 113 | Gene3D | - | 3 | 113 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3291 | Sed-Chr4:43288714 | Sed05g2008 | Sed-Chr5:33341144 | 8.90E-58 | dispersed | |
Sed05g2008 | Sed-Chr5:33341144 | Sed07g2681 | Sed-Chr7:42206324 | 8.10E-43 | dispersed | |
Sed04g3290 | Sed-Chr4:43283102 | Sed05g2008 | Sed-Chr5:33341144 | 4.40E-57 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2008 | K03113 | - | csv:101219651 | 220.705 |