Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2008 ATGTCTGAATTCAACGCGCCGATTCCAACTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGGCAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACAACTGTCCAAGGATTGAAGAAGGAATTTAGTTATAACAAGATACTTAAGGACCTGAAGAAAGAATTTTGCTGCAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTACAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGTATTGCGAAGAAGGAAAATATCAAGATGCACGGTTTCTGA 342 43.86 MSEFNAPIPTAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIAKKENIKMHGF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33341144 33344120 + Sed0026497.1 Sed05g2008 714634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2008 113 NCBIfam translation initiation factor SUI1 9 113 IPR005874 GO:0003743(InterPro)
Sed05g2008 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743(InterPro)
Sed05g2008 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed05g2008 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 4 113 - GO:0003723(PANTHER)
Sed05g2008 113 PIRSF Transl_init_SUI1_Euk 2 113 IPR005874 GO:0003743(InterPro)
Sed05g2008 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed05g2008 113 SUPERFAMILY eIF1-like 7 113 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed05g2008 113 FunFam Eukaryotic translation initiation factor SUI1 2 113 - -
Sed05g2008 113 Gene3D - 3 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3291 Sed-Chr4:43288714 Sed05g2008 Sed-Chr5:33341144 8.90E-58 dispersed
Sed05g2008 Sed-Chr5:33341144 Sed07g2681 Sed-Chr7:42206324 8.10E-43 dispersed
Sed04g3290 Sed-Chr4:43283102 Sed05g2008 Sed-Chr5:33341144 4.40E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2008 K03113 - csv:101219651 220.705