Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2013 ATGCCCGCCGGAATGATGATTCCAGCCAGAAATACGCCGCCGATGATCGGAAGGAATGGAAATGTTGGTGTTTTTGGCTCTCCGGCCAGCCTCGTTCTTGGCCAGGGAATTAATAATATGATGGAAGGGGGACAGGTAATGGAAAGTGAATATGGAATTAGATCAATGAGATCAGAATTAGGAGATCATAATCAAGATCAATTAGAGATAATTAGTGGAACTAAATCAAGCAGCGAAAACCAGGAAGAGATTGGTTCTGGTGATGAACAACAACAACGGAATCAACGCTCCAAAAAGAAGCGTTACCACCGCCATACTCAGCACCAGATTCAACAAATGGAAGCGTTCTTCAAGGAGTGTCCACATCCAGATGACAAACAAAGGAAGGAGCTGAGTAGGGAATTGAATTTAGAGCCATTGCAAGTCAAATTTTGGTTCCAAAACAAGCGAACTCAAATGAAGACACATCATGAGCGACATGAAAACACACAGCTCCGAACAGAAAATGAAAAACTTAGAGCTGAGAATATGAGATACAGAGAAGCTCTCAGTAATGCCACGTGTCCTAATTGTGGAGGCCCCACCGCCATTGGTGAGATGTCCTTTGACGAACATCATCTCAGGCTTGATAATGTTCGCTTGAGAGAAGAGATTGATCGCATTTCAGCCATAGCAGCAAAATACGTAGGAAAGCCAGTTTCAAGCTTCCCTCTTCTTTCCCCACCAATTCCTTCACGTCCTCTAGAGCTCGGAATGGGAAACTACGGAGGCCACGAGACAGGCATTGGCGCGGGTGGGGACATGTACGGGGCAGCGGACCTTCTAAGGACAATACGTGCACCATCGGAGACCGACAAGCCCATAATCATCGAGCTTGCGGTTGCGGCCATGGAGGAACTGGTCCGAATGGCTCAGATGGGCGAGCCATTATGGATGTCGAGCCTCGATGGCTCGACCGCGGTGCTTAATGAAGATGAATATGTTAGAACCTTTCCAAGGGGAATTGGACCTAAGCCATCGGGGTTTAGCTGTGAAGCTTCTCGTGCAAGTGCTGTTGTCATTATGAACCATATTAGCCTCGTTGAGATGCTCATGGATGTGAATCAATGGCCAACGGTATTCACTGGGATTGTGTCAAGAGCAATGACATTAGAAGTATTGTCAACGGGCGTTGCTGGAAATTACAACGGAGCATTACAAGTGATGACATGTGAACTACAAGTGCCTTCGCCACTGGTTCCAACTCGGGAGAGCTATTTCGTGAGGTACTGTAAGCAACATGGTGAAGGAACTTGGGCCGTGGTCGACGTGTCGTTGGACAATTTACGCCCCGCTCCCGCTCTTAGATGTCGAAGAAGGCCGTCTGGCTGTTTAATCCAAGAAATGCCTAATGGCTATTCTAAGGTTACGTGGGTTGAGCATGTTGAGGTGGATGATCGTGGGGTCCACAGTCTGTACAATCAGCTGGTTAGCTCAGGCCACGCGTTCGGCGCAAAGCGTTGGATAGCCACGTTGGATCGCCAGTGTGAACGCCTCGCCAGCGCCATGGCCACAAGTATTCCGACTGGCGATGCTGGCGTGATAACGAATCAAGAAGGAAGGAAGAGCATGTTGAAGCTGGCGGAGAGAATGGTGATGAGCTTTTGCGGCGGAGTGAGTGCGTCGACGGCGCACACGTGGACGACGCTGTCGGGAACGGGAGCTGATGACGTCAGAGTAATGACACGTAAGAGCATGGACGATCCTGGCAGGCCACCTGGCATTGTCCTCAGCGCCGCCACGTCCTTTTGGCTTCCTGTTCCTCCCAACAGAGTCTTCCATTTTCTTAGAGATGAAAATTCCCGCAATGAGTGGGATATTCTTTCCAATGGGGGAGTTGTTCAAGAAATGGCCCACATTGCAATTGGCCGCGACACCGGCAACTCTGTCTCATTGCTTCGAGTAAACAGCGCAAATTCAAGCCAAAGCAACATGCTGATATTACAAGAGAGCAGCACCGATGAAACGGCGGCGTTTGTGGTGTACGCGCCGGTGGACATCGTGGCCATAAATGTGGTGCTCAACGGCGGAGATCCGGATTACGTGGCCCTTCTGCCGTCTGGATTTGCCATTCTGCCGGACGGAAACGCCGCGAATGGGGTGGCGGAACATGGGTCCGGCGGGTCGCTTTTGACCGTTGCGTTTCAAATTTTGGTTGACTCGGTTCCCACAGCTAAGCTCTCCCTTGGGTCAGTTGCAACGGTCAATAATCTGATTGCGTGTACGGTTGAGAGAATTAAAGCCTCTTTGTCGTCCGACAATCCTTGA 2307 49.98 MPAGMMIPARNTPPMIGRNGNVGVFGSPASLVLGQGINNMMEGGQVMESEYGIRSMRSELGDHNQDQLEIISGTKSSSENQEEIGSGDEQQQRNQRSKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRAENMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLDNVRLREEIDRISAIAAKYVGKPVSSFPLLSPPIPSRPLELGMGNYGGHETGIGAGGDMYGAADLLRTIRAPSETDKPIIIELAVAAMEELVRMAQMGEPLWMSSLDGSTAVLNEDEYVRTFPRGIGPKPSGFSCEASRASAVVIMNHISLVEMLMDVNQWPTVFTGIVSRAMTLEVLSTGVAGNYNGALQVMTCELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTAHTWTTLSGTGADDVRVMTRKSMDDPGRPPGIVLSAATSFWLPVPPNRVFHFLRDENSRNEWDILSNGGVVQEMAHIAIGRDTGNSVSLLRVNSANSSQSNMLILQESSTDETAAFVVYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGNAANGVAEHGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSSDNP 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33361764 33371612 - Sed0010072.2 Sed05g2013 714639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2013 768 FunFam Homeobox-leucine zipper protein GLABRA 2 291 510 - -
Sed05g2013 768 SUPERFAMILY Bet v1-like 285 513 - -
Sed05g2013 768 CDD homeodomain 99 157 IPR001356 GO:0003677(InterPro)
Sed05g2013 768 MobiDBLite consensus disorder prediction 73 108 - -
Sed05g2013 768 Pfam Homeodomain 99 154 IPR001356 GO:0003677(InterPro)
Sed05g2013 768 ProSiteProfiles START domain profile. 282 514 IPR002913 GO:0008289(InterPro)
Sed05g2013 768 SUPERFAMILY Homeodomain-like 87 155 IPR009057 -
Sed05g2013 768 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677(InterPro)
Sed05g2013 768 SMART START_1 291 511 IPR002913 GO:0008289(InterPro)
Sed05g2013 768 MobiDBLite consensus disorder prediction 73 91 - -
Sed05g2013 768 Coils Coil 162 182 - -
Sed05g2013 768 FunFam Homeobox-leucine zipper protein HDG1 86 172 - -
Sed05g2013 768 SMART HOX_1 97 160 IPR001356 GO:0003677(InterPro)
Sed05g2013 768 SUPERFAMILY Bet v1-like 530 760 - -
Sed05g2013 768 Pfam START domain 292 511 IPR002913 GO:0008289(InterPro)
Sed05g2013 768 CDD START_ArGLABRA2_like 286 510 - -
Sed05g2013 768 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed05g2013 768 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 87 764 IPR042160 -
Sed05g2013 768 Gene3D - 322 508 IPR023393 -
Sed05g2013 768 Gene3D - 85 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2013 Sed-Chr5:33361764 Sed05g3070 Sed-Chr5:40988413 0.00E+00 dispersed
Sed05g2012 Sed-Chr5:33361764 Sed05g2013 Sed-Chr5:33361764 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38575 PF01852 START 7.70E-59 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2013 K09338 - csv:101219415 1317.37