Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2017 ATGAGAAACTTTGCTGCTCTGTTGCTGCTGGGTTTGATATGGGTGTCTCTTGTTGGTTCGATTTGGTGCCTTAAACCTGATGCGGTGAATATTGGAGCGGTTTTTACTTTTGATTCGGTTATTGGGAGAGCGGCTAAGCCGGCCATGGAAGCTGCAATTGCTGATATAAACGCGGACACTAGTATTTTGAATGGAACTAAGCTGAACTTTTTGATGGAGGATTCTAATTGTAGTGGCTTCTTGGGGTCTGTTGGAGTTTTGCAGTTACTTGAGAAAGAGATTGTGGCCATCATTGGTCCACAATCCTCTGTGGTGGCTCATGTGATATCTCAGATCGGTTCTGGTCTACAAGTTCCTCAAGTTTCATATGGTGCCACTGATCCAACATTATCAGCTCTCCAACTCCCTTTTTTCCTCCGAGCGACTTTAAGTGACTCGTACCAAATGGCTGCCATGGCTGACCTGATTGGTTATCATGGTTGGAAAGAGGTCATAGCTATATTTTTGGATGATGATTATGGCAGAAATGGGATATCTTCTTTAGGTGATGAACTACAGAAGAAAACTTGTCATATATCTCATGCGTTCGCCTTGCCTTCTCTAGCTAACCTTACAAGGATCACAGAGATACTTAACAACTCTAAACTGCTCGGTACTCGTGTTTACGTCGTTCATGTCGGCCCCGATCCCCAATTAAGAATCTTCACCATCGCCCACAAACTCGGTATGCTTACCACCAACTATGTTTGGTTTGCAACTGATTGGCTTGCCACAACTCTAGATTCATCTTCACCAACAGAACTTGATTCACTTGATATACTCAATGGGGTTGTGGGGCTACGCCCTCATACTCCACAGTCTAAAGGAAAGAGGGATTTGTGGAATCGGTTGAGCAAAATGCAGCCAAAAGGTCTAGCCAATTCTGTGTTGAATGCTTATGGACTTTATGCTTATGATTCAGTGTGGATTGTTGCCAAAGCAGTTGACAAGTTTCTCAAAGAAAATGGAAATGTCACCTTTTCATCCACAGGTAAAGTGTTTGGTTCTAATGATAGTGAAATCCAACTGGGAAAGCTGAAAGTGTTTAACGGCGGAACAGATTTGCTTCGAATCATTATGCAGACAAATTACACTGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAACATCATCAATGGTAGCTATGATGTGATTAATATAAATCAGAAGGAGATTCAAACTGTTGGTTATTGGTCTAATTACTCAGGATTCTCAGTTTCACCACCAGAAGAACAAGAGAATTCCAGTTCCCTCTTAGATCAGAAACTTGACACTATAGTTTGGCCGGGAGGAGAGTCGAAATTACCTCGAGGTTGGGTGATAGCAGATGTTGGAAAACCCCTGAGAATTGCATTCCCCAAAAGAGCAAGCTTTGTTGATTTTGTTACTCAAGTGAACAACACTGATACAGTTAGAGGGTACGTTATTGATATCTTCAAAGAAGCACTCAAGTTTATCCCATATGAAGTTCCTTACAAGTTTGAGCCTTTTGGGGATGGTCGAGTCAATCCCAGCTATGATGAACTCATTAAGTCTATTGCAAACAATGTGTTTGATGCAGCTGTTGGGGACATAGCTATAGTTACAAACCGAACAAAGATTGTAGATTTTTCTCAACCATATACCACCACTGGACTTATCATAGTAGCACCAGTTCAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGTGGAGATGTGGTGTGTAACAGCAGCTTCTTTCGTGATTGTTGGGATCGTTATTTGGATTCTCGAGCACCGAATTAACGACCATTTTCGAGGCCCTCCAAAGAGGCAGATGATCACTATCTGTCTGTTCAGCTTTTCAACTCTATTCAAGGCAAATCAGGAAGCAACCATTAACCCACTATCAAGATTGGTGATGTTGGTGTGGCTGTTCTTATTGCTGGTAATAACCTCCAGCTACACTGCAAGTTTGACATCAATCCTTACCATTCAGCAGCTTTGGTCGCCAATCCGTGGGATAGATGAGTTGGTTGCGAGTAACTTGCCGATAGGATATCAGGTTGGATCCTTTGCTTACGACTACTTGACGGAGAGCCTTTTCGTTCACCCTTCCCGACTGGTAGAGCTGTACTCGCCGGAAGATTACGAGGATGCACTCCGCCGAGGTCCCAACGGCGGCGGTGTGGCAGCGATAGTTGATGAGCTTCCTTATTTGGAGTTGTTTCTGTCTCAAACTAAGGAGTTTGGTATCATTGGCCAGCCTTTTACCAGGAGCGGATGGGGATTTGCCTTCGAGCGTGGCTCTCGACTGGCAGTTGATATGTCAACCGCAATTTTGAGACTCTCTGAGAGTGGGAAGCTTCAAGAGCTACATGATGCCTGGTTCTGTAAGCTCGGTTGTCCTGGGGAGCGGGGAGGAAAATCCGAGCCAGACCAACTTCAATTGATCAGTTTCTGGGGTTTGTATTTGCTTTGTGGAATTGCTTCCCTCATTGCACTTTTCGCATTTCTTCTAAGAATAATTCGCCAGTACATCCGCTATCAACGACATCATCGGCATTCAGAGGTAGTTACACCATCCCCTGTTTCCTCCAACACCGGCTGTACTCAGACCATTCAAAACTTTATACGGTTTATCGATGAGAAGGAAGAAGCCATCAAAAGCTTCTTTCGAGCAGCACATTTACATGGTGTTCAAAACGTGAACCAACTCCAGAAACATTCTGGAGGGGAAAAGGAGAAGGATGATTCGGAGGTACAGCTTGGGACCTCGGGTATTATTTGA 2808 43.7 MRNFAALLLLGLIWVSLVGSIWCLKPDAVNIGAVFTFDSVIGRAAKPAMEAAIADINADTSILNGTKLNFLMEDSNCSGFLGSVGVLQLLEKEIVAIIGPQSSVVAHVISQIGSGLQVPQVSYGATDPTLSALQLPFFLRATLSDSYQMAAMADLIGYHGWKEVIAIFLDDDYGRNGISSLGDELQKKTCHISHAFALPSLANLTRITEILNNSKLLGTRVYVVHVGPDPQLRIFTIAHKLGMLTTNYVWFATDWLATTLDSSSPTELDSLDILNGVVGLRPHTPQSKGKRDLWNRLSKMQPKGLANSVLNAYGLYAYDSVWIVAKAVDKFLKENGNVTFSSTGKVFGSNDSEIQLGKLKVFNGGTDLLRIIMQTNYTGLSGRIQFGEDRNIINGSYDVININQKEIQTVGYWSNYSGFSVSPPEEQENSSSLLDQKLDTIVWPGGESKLPRGWVIADVGKPLRIAFPKRASFVDFVTQVNNTDTVRGYVIDIFKEALKFIPYEVPYKFEPFGDGRVNPSYDELIKSIANNVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVQDSKSSAWVFLKPFTVEMWCVTAASFVIVGIVIWILEHRINDHFRGPPKRQMITICLFSFSTLFKANQEATINPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLWSPIRGIDELVASNLPIGYQVGSFAYDYLTESLFVHPSRLVELYSPEDYEDALRRGPNGGGVAAIVDELPYLELFLSQTKEFGIIGQPFTRSGWGFAFERGSRLAVDMSTAILRLSESGKLQELHDAWFCKLGCPGERGGKSEPDQLQLISFWGLYLLCGIASLIALFAFLLRIIRQYIRYQRHHRHSEVVTPSPVSSNTGCTQTIQNFIRFIDEKEEAIKSFFRAAHLHGVQNVNQLQKHSGGEKEKDDSEVQLGTSGII 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33393657 33402113 - Sed0002695.1 Sed05g2017 714643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2017 935 SUPERFAMILY Periplasmic binding protein-like II 442 803 - -
Sed05g2017 935 FunFam Glutamate receptor 458 574 - -
Sed05g2017 935 Pfam Receptor family ligand binding region 45 403 IPR001828 -
Sed05g2017 935 Gene3D - 144 419 - -
Sed05g2017 935 CDD GluR_Plant 461 803 - -
Sed05g2017 935 MobiDBLite consensus disorder prediction 912 935 - -
Sed05g2017 935 Gene3D - 752 810 - -
Sed05g2017 935 CDD PBP1_GABAb_receptor_plant 30 423 IPR044440 -
Sed05g2017 935 Gene3D - 48 394 - -
Sed05g2017 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 42 58 - -
Sed05g2017 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 102 130 - -
Sed05g2017 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 233 256 - -
Sed05g2017 935 FunFam Glutamate receptor 144 304 - -
Sed05g2017 935 FunFam Glutamate receptor 574 704 - -
Sed05g2017 935 Pfam Ligand-gated ion channel 804 836 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed05g2017 935 PIRSF IGluLR_plant 1 931 IPR017103 -
Sed05g2017 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 878 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed05g2017 935 SMART GluR_14 464 805 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed05g2017 935 SUPERFAMILY Periplasmic binding protein-like I 25 455 IPR028082 -
Sed05g2017 935 Gene3D - 458 573 - -
Sed05g2017 935 FunFam Glutamate receptor 700 807 - -
Sed05g2017 935 Pfam Bacterial extracellular solute-binding proteins, family 3 476 582 IPR001638 -
Sed05g2017 935 Gene3D - 574 705 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0479 Sed-Chr1:3708120 Sed05g2017 Sed-Chr5:33393657 0.00E+00 dispersed
Sed05g2017 Sed-Chr5:33393657 Sed05g2019 Sed-Chr5:33395646 0.00E+00 dispersed
Sed05g2017 Sed-Chr5:33393657 Sed05g2018 Sed-Chr5:33393657 0.00E+00 tandem
Sed01g0477 Sed-Chr1:3688822 Sed05g2017 Sed-Chr5:33393657 1.80E-252 wgd
Sed05g0892 Sed-Chr5:7163067 Sed05g2017 Sed-Chr5:33393657 6.50E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2017 K05387 - csv:101203158 1460.66