Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2019 | ATGAGAAACTTTGCTGCTCTGTTGCTGCTGGGTTTGATATGGGTGTCTCTTGTTGGTTCGATTTGGTGCCTTAAACCTGATGCGGTGAATATTGGAGCGGTTTTTACTTTTGATTCGGTTATTGGGAGAGCGGCTAAGCCGGCCATGGAAGCTGCAATTGCTGATATAAACGCGGACACTAGTATTTTGAATGGAACTAAGCTGAACTTTTTGATGGAGGATTCTAATTGTAGTGGCTTCTTGGGGTCTGTTGGAGTTTTGCAGTTACTTGAGAAAGAGATTGTGGCCATCATTGGTCCACAATCCTCTGTGGTGGCTCATGTGATATCTCAGATCGGTTCTGGTCTACAAGTTCCTCAAGTTTCATATGGTGCCACTGATCCAACATTATCAGCTCTCCAACTCCCTTTTTTCCTCCGAGCGACTTTAAGTGACTCGTACCAAATGGCTGCCATGGCTGACCTGATTGGTTATCATGGTTGGAAAGAGGTCATAGCTATATTTTTGGATGATGATTATGGCAGAAATGGGATATCTTCTTTAGGTGATGAACTACAGAAGAAAACTTGTCATATATCTCATGCGTTCGCCTTGCCTTCTCTAGCTAACCTTACAAGGATCACAGAGATACTTAACAACTCTAAACTGCTCGGTACTCGTGTTTACGTCGTTCATGTCGGCCCCGATCCCCAATTAAGAATCTTCACCATCGCCCACAAACTCGGTATGCTTACCACCAACTATGTTTGGTTTGCAACTGATTGGCTTGCCACAACTCTAGATTCATCTTCACCAACAGAACTTGATTCACTTGATATACTCAATGGGGTTGTGGGGCTACGCCCTCATACTCCACAGTCTAAAGGAAAGAGGGATTTGTGGAATCGGTTGAGCAAAATGCAGCCAAAAGGTCTAGCCAATTCTGTGTTGAATGCTTATGGACTTTATGCTTATGATTCAGTGTGGATTGTTGCCAAAGCAGTTGACAAGTTTCTCAAAGAAAATGGAAATGTCACCTTTTCATCCACAGGTAAAGTGTTTGGTTCTAATGATAGTGAAATCCAACTGGGAAAGCTGAAAGTGTTTAACGGCGGAACAGATTTGCTTCGAATCATTATGCAGACAAATTACACTGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAACATCATCAATGGTAGCTATGATGTGATTAATATAAATCAGAAGGAGATTCAAACTGTTGGTTATTGGTCTAATTACTCAGGATTCTCAGTTTCACCACCAGAAGAACAAGAGAATTCCAGTTCCCTCTTAGATCAGAAACTTGACACTATAGTTTGGCCGGGAGGAGAGTCGAAATTACCTCGAGGTTGGGTGATAGCAGATGTTGGAAAACCCCTGAGAATTGCATTCCCCAAAAGAGCAAGCTTTGTTGATTTTGTTACTCAAGTGAACAACACTGATACAGTTAGAGGGTACGTTATTGATATCTTCAAAGAAGCACTCAAGTTTATCCCATATGAAGTTCCTTACAAGTTTGAGCCTTTTGGGGATGGTCGAGTCAATCCCAGCTATGATGAACTCATTAAGTCTATTGCAAACAATGTGTTTGATGCAGCTGTTGGGGACATAGCTATAGTTACAAACCGAACAAAGATTGTAGATTTTTCTCAACCATATACCACCACTGGACTTATCATAGTAGCACCAGTTCAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGTGGAGATGTGGTGTGTAACAGCAGCTTCTTTCGTGATTGTTGGGATCGTTATTTGGATTCTCGAGCACCGAATTAACGACCATTTTCGAGGCCCTCCAAAGAGGCAGATGATCACTATCTGTCTGTTCAGCTTTTCAACTCTATTCAAGGCAAATCAGGAAGCAACCATTAACCCACTATCAAGATTGGTGATGTTGGTGTGGCTGTTCTTATTGCTGGTAATAACCTCCAGCTACACTGCAAGTTTGACATCAATCCTTACCATTCAGCAGCTTTGGTCGCCAATCCGTGGGATAGATGAGTTGGTTGCGAGTAACTTGCCGATAGGATATCAGGTTGGATCCTTTGCTTACGACTACTTGACGGAGAGCCTTTTCGTTCACCCTTCCCGACTGGTAGAGCTGTACTCGCCGGAAGATTACGAGGATGCACTCCGCCGAGGTCCCAACGGCGGCGGTGTGGCAGCGATAGTTGATGAGCTTCCTTATTTGGAGTTGTTTCTGTCTCAAACTAAGGAGTTTGGTATCATTGGCCAGCCTTTTACCAGGAGCGGATGGGGATTTGTGAGTATATGTTTTTTTTCTTCATAA | 2337 | 42.83 | MRNFAALLLLGLIWVSLVGSIWCLKPDAVNIGAVFTFDSVIGRAAKPAMEAAIADINADTSILNGTKLNFLMEDSNCSGFLGSVGVLQLLEKEIVAIIGPQSSVVAHVISQIGSGLQVPQVSYGATDPTLSALQLPFFLRATLSDSYQMAAMADLIGYHGWKEVIAIFLDDDYGRNGISSLGDELQKKTCHISHAFALPSLANLTRITEILNNSKLLGTRVYVVHVGPDPQLRIFTIAHKLGMLTTNYVWFATDWLATTLDSSSPTELDSLDILNGVVGLRPHTPQSKGKRDLWNRLSKMQPKGLANSVLNAYGLYAYDSVWIVAKAVDKFLKENGNVTFSSTGKVFGSNDSEIQLGKLKVFNGGTDLLRIIMQTNYTGLSGRIQFGEDRNIINGSYDVININQKEIQTVGYWSNYSGFSVSPPEEQENSSSLLDQKLDTIVWPGGESKLPRGWVIADVGKPLRIAFPKRASFVDFVTQVNNTDTVRGYVIDIFKEALKFIPYEVPYKFEPFGDGRVNPSYDELIKSIANNVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVQDSKSSAWVFLKPFTVEMWCVTAASFVIVGIVIWILEHRINDHFRGPPKRQMITICLFSFSTLFKANQEATINPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLWSPIRGIDELVASNLPIGYQVGSFAYDYLTESLFVHPSRLVELYSPEDYEDALRRGPNGGGVAAIVDELPYLELFLSQTKEFGIIGQPFTRSGWGFVSICFFSS | 778 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33395646 | 33402113 | - | Sed0002695.2 | Sed05g2019 | 714645 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2019 | 778 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 102 | 130 | - | - | |
Sed05g2019 | 778 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 233 | 256 | - | - | |
Sed05g2019 | 778 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 42 | 58 | - | - | |
Sed05g2019 | 778 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 29 | 771 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Sed05g2019 | 778 | Pfam | Receptor family ligand binding region | 45 | 403 | IPR001828 | - | |
Sed05g2019 | 778 | FunFam | Glutamate receptor | 144 | 304 | - | - | |
Sed05g2019 | 778 | Gene3D | - | 574 | 705 | - | - | |
Sed05g2019 | 778 | SMART | GluR_14 | 464 | 777 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Sed05g2019 | 778 | FunFam | Glutamate receptor | 574 | 704 | - | - | |
Sed05g2019 | 778 | Pfam | Ligand-gated ion channel | 583 | 687 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Sed05g2019 | 778 | Gene3D | - | 48 | 394 | - | - | |
Sed05g2019 | 778 | CDD | PBP1_GABAb_receptor_plant | 30 | 423 | IPR044440 | - | |
Sed05g2019 | 778 | Gene3D | - | 458 | 573 | - | - | |
Sed05g2019 | 778 | Gene3D | - | 144 | 419 | - | - | |
Sed05g2019 | 778 | FunFam | Glutamate receptor | 458 | 574 | - | - | |
Sed05g2019 | 778 | FunFam | Glutamate receptor | 733 | 768 | - | - | |
Sed05g2019 | 778 | SUPERFAMILY | Periplasmic binding protein-like I | 25 | 455 | IPR028082 | - | |
Sed05g2019 | 778 | SUPERFAMILY | Periplasmic binding protein-like II | 442 | 771 | - | - | |
Sed05g2019 | 778 | PIRSF | IGluLR_plant | 1 | 772 | IPR017103 | - | |
Sed05g2019 | 778 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 478 | 566 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2017 | Sed-Chr5:33393657 | Sed05g2019 | Sed-Chr5:33395646 | 0.00E+00 | dispersed | |
Sed05g2019 | Sed-Chr5:33395646 | Sed13g2206 | Sed-Chr13:26573312 | 5.40E-223 | dispersed | |
Sed05g2018 | Sed-Chr5:33393657 | Sed05g2019 | Sed-Chr5:33395646 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2019 | K05387 | - | csv:101203158 | 1225.69 |