Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2019 ATGAGAAACTTTGCTGCTCTGTTGCTGCTGGGTTTGATATGGGTGTCTCTTGTTGGTTCGATTTGGTGCCTTAAACCTGATGCGGTGAATATTGGAGCGGTTTTTACTTTTGATTCGGTTATTGGGAGAGCGGCTAAGCCGGCCATGGAAGCTGCAATTGCTGATATAAACGCGGACACTAGTATTTTGAATGGAACTAAGCTGAACTTTTTGATGGAGGATTCTAATTGTAGTGGCTTCTTGGGGTCTGTTGGAGTTTTGCAGTTACTTGAGAAAGAGATTGTGGCCATCATTGGTCCACAATCCTCTGTGGTGGCTCATGTGATATCTCAGATCGGTTCTGGTCTACAAGTTCCTCAAGTTTCATATGGTGCCACTGATCCAACATTATCAGCTCTCCAACTCCCTTTTTTCCTCCGAGCGACTTTAAGTGACTCGTACCAAATGGCTGCCATGGCTGACCTGATTGGTTATCATGGTTGGAAAGAGGTCATAGCTATATTTTTGGATGATGATTATGGCAGAAATGGGATATCTTCTTTAGGTGATGAACTACAGAAGAAAACTTGTCATATATCTCATGCGTTCGCCTTGCCTTCTCTAGCTAACCTTACAAGGATCACAGAGATACTTAACAACTCTAAACTGCTCGGTACTCGTGTTTACGTCGTTCATGTCGGCCCCGATCCCCAATTAAGAATCTTCACCATCGCCCACAAACTCGGTATGCTTACCACCAACTATGTTTGGTTTGCAACTGATTGGCTTGCCACAACTCTAGATTCATCTTCACCAACAGAACTTGATTCACTTGATATACTCAATGGGGTTGTGGGGCTACGCCCTCATACTCCACAGTCTAAAGGAAAGAGGGATTTGTGGAATCGGTTGAGCAAAATGCAGCCAAAAGGTCTAGCCAATTCTGTGTTGAATGCTTATGGACTTTATGCTTATGATTCAGTGTGGATTGTTGCCAAAGCAGTTGACAAGTTTCTCAAAGAAAATGGAAATGTCACCTTTTCATCCACAGGTAAAGTGTTTGGTTCTAATGATAGTGAAATCCAACTGGGAAAGCTGAAAGTGTTTAACGGCGGAACAGATTTGCTTCGAATCATTATGCAGACAAATTACACTGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAACATCATCAATGGTAGCTATGATGTGATTAATATAAATCAGAAGGAGATTCAAACTGTTGGTTATTGGTCTAATTACTCAGGATTCTCAGTTTCACCACCAGAAGAACAAGAGAATTCCAGTTCCCTCTTAGATCAGAAACTTGACACTATAGTTTGGCCGGGAGGAGAGTCGAAATTACCTCGAGGTTGGGTGATAGCAGATGTTGGAAAACCCCTGAGAATTGCATTCCCCAAAAGAGCAAGCTTTGTTGATTTTGTTACTCAAGTGAACAACACTGATACAGTTAGAGGGTACGTTATTGATATCTTCAAAGAAGCACTCAAGTTTATCCCATATGAAGTTCCTTACAAGTTTGAGCCTTTTGGGGATGGTCGAGTCAATCCCAGCTATGATGAACTCATTAAGTCTATTGCAAACAATGTGTTTGATGCAGCTGTTGGGGACATAGCTATAGTTACAAACCGAACAAAGATTGTAGATTTTTCTCAACCATATACCACCACTGGACTTATCATAGTAGCACCAGTTCAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGTGGAGATGTGGTGTGTAACAGCAGCTTCTTTCGTGATTGTTGGGATCGTTATTTGGATTCTCGAGCACCGAATTAACGACCATTTTCGAGGCCCTCCAAAGAGGCAGATGATCACTATCTGTCTGTTCAGCTTTTCAACTCTATTCAAGGCAAATCAGGAAGCAACCATTAACCCACTATCAAGATTGGTGATGTTGGTGTGGCTGTTCTTATTGCTGGTAATAACCTCCAGCTACACTGCAAGTTTGACATCAATCCTTACCATTCAGCAGCTTTGGTCGCCAATCCGTGGGATAGATGAGTTGGTTGCGAGTAACTTGCCGATAGGATATCAGGTTGGATCCTTTGCTTACGACTACTTGACGGAGAGCCTTTTCGTTCACCCTTCCCGACTGGTAGAGCTGTACTCGCCGGAAGATTACGAGGATGCACTCCGCCGAGGTCCCAACGGCGGCGGTGTGGCAGCGATAGTTGATGAGCTTCCTTATTTGGAGTTGTTTCTGTCTCAAACTAAGGAGTTTGGTATCATTGGCCAGCCTTTTACCAGGAGCGGATGGGGATTTGTGAGTATATGTTTTTTTTCTTCATAA 2337 42.83 MRNFAALLLLGLIWVSLVGSIWCLKPDAVNIGAVFTFDSVIGRAAKPAMEAAIADINADTSILNGTKLNFLMEDSNCSGFLGSVGVLQLLEKEIVAIIGPQSSVVAHVISQIGSGLQVPQVSYGATDPTLSALQLPFFLRATLSDSYQMAAMADLIGYHGWKEVIAIFLDDDYGRNGISSLGDELQKKTCHISHAFALPSLANLTRITEILNNSKLLGTRVYVVHVGPDPQLRIFTIAHKLGMLTTNYVWFATDWLATTLDSSSPTELDSLDILNGVVGLRPHTPQSKGKRDLWNRLSKMQPKGLANSVLNAYGLYAYDSVWIVAKAVDKFLKENGNVTFSSTGKVFGSNDSEIQLGKLKVFNGGTDLLRIIMQTNYTGLSGRIQFGEDRNIINGSYDVININQKEIQTVGYWSNYSGFSVSPPEEQENSSSLLDQKLDTIVWPGGESKLPRGWVIADVGKPLRIAFPKRASFVDFVTQVNNTDTVRGYVIDIFKEALKFIPYEVPYKFEPFGDGRVNPSYDELIKSIANNVFDAAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVQDSKSSAWVFLKPFTVEMWCVTAASFVIVGIVIWILEHRINDHFRGPPKRQMITICLFSFSTLFKANQEATINPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLWSPIRGIDELVASNLPIGYQVGSFAYDYLTESLFVHPSRLVELYSPEDYEDALRRGPNGGGVAAIVDELPYLELFLSQTKEFGIIGQPFTRSGWGFVSICFFSS 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33395646 33402113 - Sed0002695.2 Sed05g2019 714645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2019 778 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 102 130 - -
Sed05g2019 778 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 233 256 - -
Sed05g2019 778 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 42 58 - -
Sed05g2019 778 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 771 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed05g2019 778 Pfam Receptor family ligand binding region 45 403 IPR001828 -
Sed05g2019 778 FunFam Glutamate receptor 144 304 - -
Sed05g2019 778 Gene3D - 574 705 - -
Sed05g2019 778 SMART GluR_14 464 777 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed05g2019 778 FunFam Glutamate receptor 574 704 - -
Sed05g2019 778 Pfam Ligand-gated ion channel 583 687 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed05g2019 778 Gene3D - 48 394 - -
Sed05g2019 778 CDD PBP1_GABAb_receptor_plant 30 423 IPR044440 -
Sed05g2019 778 Gene3D - 458 573 - -
Sed05g2019 778 Gene3D - 144 419 - -
Sed05g2019 778 FunFam Glutamate receptor 458 574 - -
Sed05g2019 778 FunFam Glutamate receptor 733 768 - -
Sed05g2019 778 SUPERFAMILY Periplasmic binding protein-like I 25 455 IPR028082 -
Sed05g2019 778 SUPERFAMILY Periplasmic binding protein-like II 442 771 - -
Sed05g2019 778 PIRSF IGluLR_plant 1 772 IPR017103 -
Sed05g2019 778 Pfam Ligated ion channel L-glutamate- and glycine-binding site 478 566 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2017 Sed-Chr5:33393657 Sed05g2019 Sed-Chr5:33395646 0.00E+00 dispersed
Sed05g2019 Sed-Chr5:33395646 Sed13g2206 Sed-Chr13:26573312 5.40E-223 dispersed
Sed05g2018 Sed-Chr5:33393657 Sed05g2019 Sed-Chr5:33395646 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2019 K05387 - csv:101203158 1225.69