Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2032 | ATGGCCTGGACCCGACTCGCCGCCATCGGCCACGGCTCCTCCGCCACCGTACACCTCGCCGCCGCCGCACCCTCCGGCGACCTCTTCGCCGTTAAGTCCGCCGAGCTTCCCAAATCGAACTTCTTGAAAACAGAGCAAAAGATTCTTTCATCTCTGTCCCACCCGTCCATTGTGAAATACAGGGGATTCGATTTAACGACGGAAAATGGGAAAATGGTGTATAATCTCTTCATGGAGTACGCCGCCGGCGGTTCCCTCGCCGACGAAATTCGCCGGGGCGGCGGCCGGATTAAGGAGGCTGCGGCGGGGTTCTACACGCGTCAAATTTTGAAAGGATTGGAGTATTTGCACAAACGGGGTTTGGTCCATTGCGATGTTAAAGCCGAGAATGTACTAATCGCCGGCGATGGTTTGAAGATTGCGGATTTCGGATGCTCGAAAAGGGTTTGTGATACGGCGGCCGGGTTCGGCGGAACGCCGATGTTCATGTCGCCGGAGGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGATATTTGGGCAGTTGGGTGTACTTTAATCCAAATGGTCACCGGCGCTCCGCCGTGGCCCACCGCCGGCGACCCAGTTTCGGTATTGTACCGGATTGGATATTCCGGCGATTCGCCGGAAATTCCAAGCTTCCTATCGGAGAAAGGTAAGGATTTTTTGGGGAAATGCTTTAGAAGAAACTCGACAGAACGGTGGACCGCAAGCCAACTTCTCGAGCATCCATTTTTGGAAGAATTTGAAGAAATCAAGGAATTAAATTCAAATTCAAATTCGCCGACGAGTATTTTGGATCAAGGGCTTTGGAATTCAATGGAAGAAGAAACAAAAGCTCTGTTGAAAACAGAGAATTTTGAAGATGACAGAATCGGACGGCTGTCGTTTTTTCCGGAGGAAATCAAGTGGGAATTGGAAGATGAAAATTGGATCATGATCAGAAAAAGTGAAAGAGATCAAGATTCTAGAAGAAGTGATTTTGAGGAAAAGGATAGAATCGGTATTGTGAAAATAAGTGTTTGGAATTGTTAG | 1056 | 49.34 | MAWTRLAAIGHGSSATVHLAAAAPSGDLFAVKSAELPKSNFLKTEQKILSSLSHPSIVKYRGFDLTTENGKMVYNLFMEYAAGGSLADEIRRGGGRIKEAAAGFYTRQILKGLEYLHKRGLVHCDVKAENVLIAGDGLKIADFGCSKRVCDTAAGFGGTPMFMSPEVARGEKQGISSDIWAVGCTLIQMVTGAPPWPTAGDPVSVLYRIGYSGDSPEIPSFLSEKGKDFLGKCFRRNSTERWTASQLLEHPFLEEFEEIKELNSNSNSPTSILDQGLWNSMEEETKALLKTENFEDDRIGRLSFFPEEIKWELEDENWIMIRKSERDQDSRRSDFEEKDRIGIVKISVWNC | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33553953 | 33555075 | - | Sed0005452.1 | Sed05g2032 | 714658 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2032 | 351 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 32 | IPR017441 | GO:0005524(InterPro) | |
Sed05g2032 | 351 | Pfam | Protein kinase domain | 5 | 253 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g2032 | 351 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 254 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Sed05g2032 | 351 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 121 | 133 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g2032 | 351 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 311 | - | - | |
Sed05g2032 | 351 | CDD | STKc_MAPKKK | 3 | 253 | - | - | |
Sed05g2032 | 351 | SMART | serkin_6 | 3 | 253 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g2032 | 351 | ProSiteProfiles | Protein kinase domain profile. | 3 | 253 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g2032 | 351 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 272 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1174 | Sed-Chr1:8737856 | Sed05g2032 | Sed-Chr5:33553953 | 3.00E-54 | dispersed | |
Sed05g2032 | Sed-Chr5:33553953 | Sed10g0591 | Sed-Chr10:3934828 | 1.70E-91 | dispersed | |
Sed04g3226 | Sed-Chr4:42826644 | Sed05g2032 | Sed-Chr5:33553953 | 1.60E-82 | transposed | |
Sed05g2360 | Sed-Chr5:36104657 | Sed05g2032 | Sed-Chr5:33553953 | 9.30E-29 | transposed | |
Sed10g0647 | Sed-Chr10:4405625 | Sed05g2032 | Sed-Chr5:33553953 | 2.00E-60 | transposed | |
Sed11g0293 | Sed-Chr11:2692330 | Sed05g2032 | Sed-Chr5:33553953 | 2.50E-45 | transposed | |
Sed11g0580 | Sed-Chr11:6418272 | Sed05g2032 | Sed-Chr5:33553953 | 1.60E-42 | transposed | |
Sed01g0494 | Sed-Chr1:3780897 | Sed05g2032 | Sed-Chr5:33553953 | 3.60E-98 | wgd | |
Sed14g1340 | Sed-Chr14:22237849 | Sed05g2032 | Sed-Chr5:33553953 | 6.60E-93 | wgd | |
Sed04g3280 | Sed-Chr4:43183469 | Sed05g2032 | Sed-Chr5:33553953 | 4.20E-147 | wgd | |
Sed05g0913 | Sed-Chr5:7282013 | Sed05g2032 | Sed-Chr5:33553953 | 4.10E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79195 | PF00069 | Pkinase | 1.30E-55 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2032 | K20716 | - | csv:101205351 | 487.263 |