Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2032 ATGGCCTGGACCCGACTCGCCGCCATCGGCCACGGCTCCTCCGCCACCGTACACCTCGCCGCCGCCGCACCCTCCGGCGACCTCTTCGCCGTTAAGTCCGCCGAGCTTCCCAAATCGAACTTCTTGAAAACAGAGCAAAAGATTCTTTCATCTCTGTCCCACCCGTCCATTGTGAAATACAGGGGATTCGATTTAACGACGGAAAATGGGAAAATGGTGTATAATCTCTTCATGGAGTACGCCGCCGGCGGTTCCCTCGCCGACGAAATTCGCCGGGGCGGCGGCCGGATTAAGGAGGCTGCGGCGGGGTTCTACACGCGTCAAATTTTGAAAGGATTGGAGTATTTGCACAAACGGGGTTTGGTCCATTGCGATGTTAAAGCCGAGAATGTACTAATCGCCGGCGATGGTTTGAAGATTGCGGATTTCGGATGCTCGAAAAGGGTTTGTGATACGGCGGCCGGGTTCGGCGGAACGCCGATGTTCATGTCGCCGGAGGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGATATTTGGGCAGTTGGGTGTACTTTAATCCAAATGGTCACCGGCGCTCCGCCGTGGCCCACCGCCGGCGACCCAGTTTCGGTATTGTACCGGATTGGATATTCCGGCGATTCGCCGGAAATTCCAAGCTTCCTATCGGAGAAAGGTAAGGATTTTTTGGGGAAATGCTTTAGAAGAAACTCGACAGAACGGTGGACCGCAAGCCAACTTCTCGAGCATCCATTTTTGGAAGAATTTGAAGAAATCAAGGAATTAAATTCAAATTCAAATTCGCCGACGAGTATTTTGGATCAAGGGCTTTGGAATTCAATGGAAGAAGAAACAAAAGCTCTGTTGAAAACAGAGAATTTTGAAGATGACAGAATCGGACGGCTGTCGTTTTTTCCGGAGGAAATCAAGTGGGAATTGGAAGATGAAAATTGGATCATGATCAGAAAAAGTGAAAGAGATCAAGATTCTAGAAGAAGTGATTTTGAGGAAAAGGATAGAATCGGTATTGTGAAAATAAGTGTTTGGAATTGTTAG 1056 49.34 MAWTRLAAIGHGSSATVHLAAAAPSGDLFAVKSAELPKSNFLKTEQKILSSLSHPSIVKYRGFDLTTENGKMVYNLFMEYAAGGSLADEIRRGGGRIKEAAAGFYTRQILKGLEYLHKRGLVHCDVKAENVLIAGDGLKIADFGCSKRVCDTAAGFGGTPMFMSPEVARGEKQGISSDIWAVGCTLIQMVTGAPPWPTAGDPVSVLYRIGYSGDSPEIPSFLSEKGKDFLGKCFRRNSTERWTASQLLEHPFLEEFEEIKELNSNSNSPTSILDQGLWNSMEEETKALLKTENFEDDRIGRLSFFPEEIKWELEDENWIMIRKSERDQDSRRSDFEEKDRIGIVKISVWNC 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33553953 33555075 - Sed0005452.1 Sed05g2032 714658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2032 351 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Sed05g2032 351 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2032 351 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 254 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed05g2032 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2032 351 Gene3D Transferase(Phosphotransferase) domain 1 2 311 - -
Sed05g2032 351 CDD STKc_MAPKKK 3 253 - -
Sed05g2032 351 SMART serkin_6 3 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2032 351 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2032 351 SUPERFAMILY Protein kinase-like (PK-like) 4 272 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1174 Sed-Chr1:8737856 Sed05g2032 Sed-Chr5:33553953 3.00E-54 dispersed
Sed05g2032 Sed-Chr5:33553953 Sed10g0591 Sed-Chr10:3934828 1.70E-91 dispersed
Sed04g3226 Sed-Chr4:42826644 Sed05g2032 Sed-Chr5:33553953 1.60E-82 transposed
Sed05g2360 Sed-Chr5:36104657 Sed05g2032 Sed-Chr5:33553953 9.30E-29 transposed
Sed10g0647 Sed-Chr10:4405625 Sed05g2032 Sed-Chr5:33553953 2.00E-60 transposed
Sed11g0293 Sed-Chr11:2692330 Sed05g2032 Sed-Chr5:33553953 2.50E-45 transposed
Sed11g0580 Sed-Chr11:6418272 Sed05g2032 Sed-Chr5:33553953 1.60E-42 transposed
Sed01g0494 Sed-Chr1:3780897 Sed05g2032 Sed-Chr5:33553953 3.60E-98 wgd
Sed14g1340 Sed-Chr14:22237849 Sed05g2032 Sed-Chr5:33553953 6.60E-93 wgd
Sed04g3280 Sed-Chr4:43183469 Sed05g2032 Sed-Chr5:33553953 4.20E-147 wgd
Sed05g0913 Sed-Chr5:7282013 Sed05g2032 Sed-Chr5:33553953 4.10E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79195 PF00069 Pkinase 1.30E-55 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2032 K20716 - csv:101205351 487.263