Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2033 ATGGACGCCGCCCCTTCTCCTCCTCCTCCTCCTCCGCCGTCCTCCTCCGCCACCGTTCACTTTCCGGTCAACCTCAATTCCACCGCCGACGACAATCCCATCGAATCCCCTCCACCGCTTCCGCGGCCTCCTCCTCCTCCTCCGCCGTCCTTCCACGCCCACCGCGCCCTCTTCGACGAGATGAACTTCTTCGCCGCCGATGATAAATCCCGCGTTCTTGTCTCCGCCGCCGCAGACTCCAAACTCAGCGGCGGTTCCGCCAATCTCACTCTTAAAGTAAACACAGGGTTGAATCTTTTGACGACGAATTCGAGTAGTGATCAATCGATGGTGGACGATGGAGCTTCACCAAATTTGGAAGAGAAAAGATCAAAAAACGAGAGAGCAGTTCTTGAAGCTGAAATAGAGAGAGTAAGTACAGAGAATAAACGATTAAAGGAGATGTTAAATCAAGTAACGACCAATTACCAAGAGTTGAATACGCATTACACCACACTAATTCAAAACCAAAAGGCGGCCGATGCCGGGGACTCGATTGACGGAAAGGATGGCAGCAGTGGAGGAAATAACAGTAATAAGTTGGTGCCAAGGCAATTCATGGATCTTGGATTGGCAACCAATGTCGACGCCGATGAGCGGTCGATGTCGTCCGAAGGGAGGTCGCGGTCGACTGGGACGACCGGTGATGCATCCTCGAAACAACATAGCCCAGATCAAACCTCAAATTGGGGTTCGAGTAAAGTTCCTAAATTCAATCCTTCTTCATCTTCTTCGGGTAAAGAAGTAGATCAAACAGAAGCTACCATGAGAAAAGCAAGAGTCTCTGTTCGAGCCAGATCAGAAGCACCCATGATCACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCTTACTATCGATGCACAATGGCCGCTGGCTGCCCCGTTCGAAAACAAGTACAAAGATGTGCAGAAGACAAGACAATTTTGATAACAACGTACGAAGGTAACCACAACCATCCGTTACCGCCCGCCGCCATGGCTATGGCTTCCACAACATCATCAGCTGCTAAAATGCTGCTATCTGGATCCATGTCAAGTGCTGACGGTTTATTAAACTCTAATTTTCTAGCAAGAACCCTATTGCCATGTTCTTCGAGCATGCCCACAATCTCGGCCTCCGCACCATTTCCAACTGTCACTTTAGACCTAACTCAAACCCCGAATCCTCTATTCCAACGCCCGACAGTCAATCACTTCCCGATCCCGTTCATGGGCAGTCCACCCCAAGGCTTTCCACAAATTTTTGGACATACATTATACAATCAATCAAAGTTCTCCAACCTCCAAATGTCCAAGGACATTGAACTGCCGCCATCTCCAGCACCCCAAAATCCGTTGGCTGACACGTTGAGTGCGGCCATCGCTTCTGACCCGAGTTTCCTTGCAGCGTTTGCAACTGCCATGACGTCGCTAATCGGGGGATCTCATCATCAGAATGAAAATGTCAATGGGAATAATAATGTTGATAATAATACAACTAACAGTAACAACAACCAACTATAA 1575 48.57 MDAAPSPPPPPPPSSSATVHFPVNLNSTADDNPIESPPPLPRPPPPPPPSFHAHRALFDEMNFFAADDKSRVLVSAAADSKLSGGSANLTLKVNTGLNLLTTNSSSDQSMVDDGASPNLEEKRSKNERAVLEAEIERVSTENKRLKEMLNQVTTNYQELNTHYTTLIQNQKAADAGDSIDGKDGSSGGNNSNKLVPRQFMDLGLATNVDADERSMSSEGRSRSTGTTGDASSKQHSPDQTSNWGSSKVPKFNPSSSSSGKEVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAAKMLLSGSMSSADGLLNSNFLARTLLPCSSSMPTISASAPFPTVTLDLTQTPNPLFQRPTVNHFPIPFMGSPPQGFPQIFGHTLYNQSKFSNLQMSKDIELPPSPAPQNPLADTLSAAIASDPSFLAAFATAMTSLIGGSHHQNENVNGNNNVDNNTTNSNNNQL 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33571348 33574776 - Sed0013409.1 Sed05g2033 714659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2033 524 Pfam WRKY DNA -binding domain 287 344 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2033 524 Coils Coil 121 162 - -
Sed05g2033 524 Gene3D WRKY domain 270 347 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2033 524 MobiDBLite consensus disorder prediction 207 281 - -
Sed05g2033 524 MobiDBLite consensus disorder prediction 102 124 - -
Sed05g2033 524 FunFam probable WRKY transcription factor 31 270 347 - -
Sed05g2033 524 ProSiteProfiles WRKY domain profile. 280 346 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2033 524 MobiDBLite consensus disorder prediction 500 524 - -
Sed05g2033 524 MobiDBLite consensus disorder prediction 1 51 - -
Sed05g2033 524 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 110 503 IPR044810 GO:0003700(InterPro)
Sed05g2033 524 MobiDBLite consensus disorder prediction 172 195 - -
Sed05g2033 524 SMART WRKY_cls 285 345 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2033 524 MobiDBLite consensus disorder prediction 1 17 - -
Sed05g2033 524 MobiDBLite consensus disorder prediction 219 263 - -
Sed05g2033 524 MobiDBLite consensus disorder prediction 34 51 - -
Sed05g2033 524 MobiDBLite consensus disorder prediction 18 33 - -
Sed05g2033 524 SUPERFAMILY WRKY DNA-binding domain 278 346 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2033 Sed-Chr5:33571348 Sed10g0589 Sed-Chr10:3914059 1.30E-87 dispersed
Sed14g1331 Sed-Chr14:22164728 Sed05g2033 Sed-Chr5:33571348 4.70E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38577 PF03106 WRKY 2.40E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2033 - - - 0.0