Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2040 ATGAAAATGATGATGACCTCCGGCGGAATGGGTTCGATACCTTCGCCGATCTCTCCGGCGCCGGGGATTTTAGGGGTGAGAAACATCCCCGGCGGTTACGGGTGGCCGTTGTTGGGGGCGATGGGCGACCGGCTGGACTACTTCTGGTTTGAAGGGCCGGAGAGGTTTTTCAGGAGCAGAATGGAGAAGAACGGAAGCACGGTGTTCCGGACGAACGTTCCGCCGTCGTTCCCGTTCTTGACGGCGGATCCGAGAGTGATTGCGGTTCTGGATTGCAAATCCTTTTCGCATCTGTTCGATATGGACATCGTGGACAAGAAGAACGTTCTGGTCGGCGATTTTATGCCGAGTACCCGTTTCACCGGAAATCTCCGAGTCTGCGCTTATTTGGATACACAGGAATCTCAGCATTCCAAGATAAAAAAGTTCATAACAGACATTTTACGACGGAGCTCGAAGATTTGGATACCGGAGTTGGAATCGAGCTTGTCCGGTTTATGGGACAGCATAGAATCCGATATGGCGAAAACCCCAAAACCCAGCAGCTACCGAATCCCTCTCCAACGAGCCCTTTTCAGTTTCTTCTCCAAAACCCTCGCCGGCGCCGACCCGGCCAAGTCGCCGGAAGTGGCGGATTCCGGCTACCTGGACTTCATCCTCTGGCTTGGCCTCCAGCTCGGCCCCACCATCCACCTCGGCCTTTTCCAACCCCTTGAAGAAATCTTCCTCCACTCTTTCCGACTTCCCTTCTTCCCCGTCGCCGGCCGGTACAAACGGCTCTATGATTTCGTCGATAAGCAAGGAGAAGAGGTAGTCCGGCGAGGCGTAACCGATTTCGGGTTGACAAAAGAGGAAGCTATTCACAATATCCTCTTCACAATGGGATTCAATGCCTACGGCGGGTTCAGTCTCTTCATCCCGGTTCTCTTAGACCGAATACTCACCGACAAAACCGGCTTGCAGCAAAGAATCCGCGACGAAGTCAGGGCCAAAACCGGGTCCGGTCTAACATTCGAGTCGATCAAGGATTTGGAGCTGGTCTACTCGGTCGTCTACGAGACGCTCCGGCTCGACCCCCCGGTTCCCTCCCAATTCGCAAGAGCCAGAAAAGATTTCAAGCTGAGTTCACACGATTCGGCGTTCAACGTCAAGAAAGGGGAGCTGCTTTGTGGGTTTCAGCCGCTGGTGATGAGGGACCCGAAGGTGTTTAATGAACCGGAGTCGTTTAAGCCTGACCGGTTCATGGGGGAGAAAGGGGCGGAGCTTTTGAATTACTTGTTTTGGTCGAACGGGCCGCAGACGGCGACGCCGAGCGAGCATAACAAGCAGTGTCCCGGCAAGGATTTGGTGGTGCTGACGGCGGTGGTGTTTGTGGCTTACATTTTCCGGCGATATGATTCCATTTCTGGGGAAGGTGGTTCGGTTACAGCATTTCAGAGGGCTATTTGA 1449 53.9 MKMMMTSGGMGSIPSPISPAPGILGVRNIPGGYGWPLLGAMGDRLDYFWFEGPERFFRSRMEKNGSTVFRTNVPPSFPFLTADPRVIAVLDCKSFSHLFDMDIVDKKNVLVGDFMPSTRFTGNLRVCAYLDTQESQHSKIKKFITDILRRSSKIWIPELESSLSGLWDSIESDMAKTPKPSSYRIPLQRALFSFFSKTLAGADPAKSPEVADSGYLDFILWLGLQLGPTIHLGLFQPLEEIFLHSFRLPFFPVAGRYKRLYDFVDKQGEEVVRRGVTDFGLTKEEAIHNILFTMGFNAYGGFSLFIPVLLDRILTDKTGLQQRIRDEVRAKTGSGLTFESIKDLELVYSVVYETLRLDPPVPSQFARARKDFKLSSHDSAFNVKKGELLCGFQPLVMRDPKVFNEPESFKPDRFMGEKGAELLNYLFWSNGPQTATPSEHNKQCPGKDLVVLTAVVFVAYIFRRYDSISGEGGSVTAFQRAI 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33618777 33626321 - Sed0018917.1 Sed05g2040 714666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2040 482 Pfam Cytochrome P450 318 466 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g2040 482 PANTHER CYTOCHROME P450 26 29 465 - GO:0016125(PANTHER)|GO:0016491(PANTHER)
Sed05g2040 482 SUPERFAMILY Cytochrome P450 26 469 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g2040 482 FunFam Allene oxide synthase, chloroplastic 24 481 - -
Sed05g2040 482 PRINTS E-class P450 group IV signature 381 395 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g2040 482 PRINTS E-class P450 group IV signature 344 360 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g2040 482 PRINTS E-class P450 group IV signature 444 462 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g2040 482 PRINTS E-class P450 group IV signature 397 415 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g2040 482 CDD CYP74 58 474 - -
Sed05g2040 482 Gene3D Cytochrome P450 24 478 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2040 Sed-Chr5:33618777 Sed10g2070 Sed-Chr10:37200964 1.40E-104 dispersed
Sed05g2040 Sed-Chr5:33618777 Sed10g1305 Sed-Chr10:28636039 4.40E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2040 K10528 - csv:101223126 766.148