Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2043 ATGAACCCTAGATTAGGGTTTGCTTTGTTGGTTTTGATCTCTGCTCTACTGGGTGCCGATTCAAAGTGCCCTAGAACATGCGGTGAAGCTCTTGGTTCATACTTCATCTGGGAAGGGAGCGATTTAACTCTCATCTCCAATGCGTTTAACTTACAATCCCCTGATATCATTGTCAGCTACAACACAGATAAAGTTCCCAACAGAGACAGTATTCGTAGCGGCGACAGGATCAACATTCCATTTTCTTGTGACTGTATTAGGGATTCGTTTCTGGGTCATGAGTTTAAGTACACGATTAAGACTAATGATACTTACAACCATATTGCGCACAAACTCTATGCGAATTTGACTACGGTGGATATGTTACAGAGATTCAATAGTTTTAATGTTCTTAATCTTCCTCCAAATGGGGTCTTGAGTGTTGTGGTGAATTGCTCATGTGGGGATCCTGATGTTTCCAAGACTTATGGGCTGTTTGTTACTTACCCTCTTCGATCTGATGATAGTTGGGATGGCTTGCAAAGGGTTACGAATGTTAGCTCCACTTTGCTGCAGCAGTACAATCTGCGTGTGAATTTCACGCCAGGGAATTTGGTCTTTATTCCAGGCAAAGATCGAAGTGGCAACTATCCACCTTTAATTTTAAGCACAGGACTTTCAGGTGGAGCCATTGCAGGCATAATTATAGGTGTAGTACTTGGGGTTTTACTTGTTGCAGGCGTCATTTACATTGCCATTCGAAGGAGGAAATCAAAAAATTCGAAACTGCTGGCGTTCTCTCAAGATTTATCTTCTCAAGACGGGCGTGGTCTTATTCCTGGAGGTTCCTTAGATAAATCTACTGAATTAAATGGTCAAGGTATAGCTGCAGTTACAAATATTACTGTGGAAAAATCAGTGGACTTCTCATTTGAAGAACTTGCGAAGGCCACCGACAACTTTAGCTTGGCTAACAAAATCGGTGAAGGTGGCTTTGGATCAGTTTACTATGCAGAACTCAGAGGAGAGAAAGCAGCAATAAAGAAGATGGATATGGAAGCTTCAAGGGAGTTCCTTGCAGAAATTAAGGTTCTAACACGCGTTCACCACTTGAACTTGGTGCGCTTGATAGGGTATTGTGTTGAGAATTCCTTATTCCTAGTCTATGAGTATATTGAGAATGGCAACTTGGGTGAACATTTACGTGGCACAGGTCGGAATCCATTGCCCTGGCCTTCTAGGGTCCAAATAGCTCTCGATTCAGCCCGAGGCCTTGAGTATATCCATGAGCACACCGTTCCTGTTTATATTCATCGTGATATTAAATCAGCCAACATATTGATTGACAAGAACTTTCATGGAAAGGTTGCAGATTTCGGATTAACCAAGTTGACTGAAGTTGGAAATTCATCGCTTCCTACTCGTCTCGTGGGCACATTTGGATATATGCCACCGGAATATGCACAATATGGTGATGTTTCTCCAAAAATCGACGTATATGCTTTCGGCGTAGTTCTTTATGAGCTTATTTCAGCCAAGGAAGCTGTGGTCAAGACAAATAAAGCCAGTGCAATTAATGAATCAAAAGGCCTCGTCGCTTTGTTTGAAGGTGTACTGAATCAACCCGACGCAAAAGAGAACCTTCACAAACTAGTCGACCCGAGACTCGAAGAGAACTACCCTCTCGATTCAGTATTCAAGATGGCTCAGCTTGCCAAAGCATGTACGCATGAGAATCCACAGCTACGTCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCTGCGACCGAGGATTGGGACGTCGGCTCTTTCTACGAAAACCAAGCTCTCGTCAACTTGATGTCGGGAAGGTAG 1845 43.09 MNPRLGFALLVLISALLGADSKCPRTCGEALGSYFIWEGSDLTLISNAFNLQSPDIIVSYNTDKVPNRDSIRSGDRINIPFSCDCIRDSFLGHEFKYTIKTNDTYNHIAHKLYANLTTVDMLQRFNSFNVLNLPPNGVLSVVVNCSCGDPDVSKTYGLFVTYPLRSDDSWDGLQRVTNVSSTLLQQYNLRVNFTPGNLVFIPGKDRSGNYPPLILSTGLSGGAIAGIIIGVVLGVLLVAGVIYIAIRRRKSKNSKLLAFSQDLSSQDGRGLIPGGSLDKSTELNGQGIAAVTNITVEKSVDFSFEELAKATDNFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMEASREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEYIENGNLGEHLRGTGRNPLPWPSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNKASAINESKGLVALFEGVLNQPDAKENLHKLVDPRLEENYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33662228 33667395 - Sed0012663.1 Sed05g2043 714669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2043 614 ProSiteProfiles Protein kinase domain profile. 314 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2043 614 FunFam PTI1-like tyrosine-protein kinase 3 385 600 - -
Sed05g2043 614 Pfam Protein kinase domain 316 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2043 614 SMART serkin_6 314 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2043 614 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524(InterPro)
Sed05g2043 614 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 613 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Sed05g2043 614 Gene3D Transferase(Phosphotransferase) domain 1 385 605 - -
Sed05g2043 614 SUPERFAMILY Protein kinase-like (PK-like) 298 586 IPR011009 -
Sed05g2043 614 Gene3D Phosphorylase Kinase; domain 1 287 384 - -
Sed05g2043 614 FunFam LysM receptor kinase 2 293 384 - -
Sed05g2043 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2043 Sed-Chr5:33662228 Sed06g1667 Sed-Chr6:41434128 1.40E-77 dispersed
Sed05g2043 Sed-Chr5:33662228 Sed06g2179 Sed-Chr6:45543130 1.40E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79196 PF00069 Pkinase 1.10E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2043 K13429 - csv:101203576 1015.37