Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2046 ATGGCTAGATTTGAAGATCACAACAACAACAACAGTTGTAACAGTGGCCTTTCTTCTACTCCCATGATGATGATGATGATCAATTCTAATTCTCAAATGTTGGATCAAAACAACAACGACAACGACAACAACATCAACAATAACAAGATGTTTTTGCCTTTGTCTTGGTCTAATTCTTCTACCAACAATGTTTCAAGGGTTTCTCCTTTTGTTCCTCAACCTATCAACAACTCCTGCCGTGCTCAAATTATGGCTCATCCTCTTTTTCCTCGCCTCTTGGCCTCCTTTGCTAACTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGCGCGGTGGCCGCCGGAAGCTGTAGGACGGCGGCGCGTGGGGATGACGACCCAGCTTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAGCCTTTTAAAGAAGCAATGCTTTTTTGCTCAAGAATTGAGTCTCAGCTCAAAGCCGTAGCAGTTTCTTCTTCTACTTCTGCTGGTTGTGAGCTGGTTGGGCAGAACGAGTGTTCGAAGGAGATCGAGGTCGATATGAACGAAAACTATATCGATCCTCAAGCTGAAGAGAAGGAACTTAAAGGCCAGCTTCTGCGAAAATACAGTGGATACCTCGGCAGCCTAAAGCAAGAGTTTCTAAAGAAGAAGAAGAATGGAAAGTTACCGAAAGAAGCTCGACAACAGCTGCTCGACTGGTGGAGCCGACACTACAAATGGCCATACCCTTCGGAGTCTCAAAAGACGGCATTGGCTGAGTCGACAGGGCTCGATTTGAAGCAGATCAACAACTGGTTCATCAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGACAATGTCATTTGCAATCCTTTCTCTATGGAGTGTTCTTCCACTCTTTTCTGA 996 46.08 MARFEDHNNNNSCNSGLSSTPMMMMMINSNSQMLDQNNNDNDNNINNNKMFLPLSWSNSSTNNVSRVSPFVPQPINNSCRAQIMAHPLFPRLLASFANCQKVGAPPEVVARLEQACAVAAGSCRTAARGDDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFCSRIESQLKAVAVSSSTSAGCELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKTALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMECSSTLF 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33703826 33709732 - Sed0010436.1 Sed05g2046 714672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2046 331 SMART KNOX2_2 125 176 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g2046 331 FunFam Homeobox protein knotted-1-like 2 238 300 - -
Sed05g2046 331 ProSiteProfiles 'Homeobox' domain profile. 233 296 IPR001356 GO:0003677(InterPro)
Sed05g2046 331 CDD homeodomain 245 297 IPR001356 GO:0003677(InterPro)
Sed05g2046 331 ProSitePatterns 'Homeobox' domain signature. 271 294 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed05g2046 331 Pfam Homeobox KN domain 253 292 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed05g2046 331 Gene3D - 238 300 - -
Sed05g2046 331 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 77 303 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g2046 331 SMART HOX_1 235 300 IPR001356 GO:0003677(InterPro)
Sed05g2046 331 Pfam KNOX1 domain 80 117 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g2046 331 SMART ELK_2 213 234 IPR005539 GO:0003677(InterPro)
Sed05g2046 331 Pfam KNOX2 domain 131 173 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g2046 331 Pfam ELK domain 213 234 IPR005539 GO:0003677(InterPro)
Sed05g2046 331 ProSiteProfiles ELK domain profile. 213 233 IPR005539 GO:0003677(InterPro)
Sed05g2046 331 SUPERFAMILY Homeodomain-like 235 310 IPR009057 -
Sed05g2046 331 SMART KNOX1_2 77 121 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2046 Sed-Chr5:33703826 Sed10g0582 Sed-Chr10:3858229 1.20E-99 dispersed
Sed14g1325 Sed-Chr14:22133290 Sed05g2046 Sed-Chr5:33703826 7.80E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38578 PF03791 KNOX2 8.00E-22 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2046 - - - 0.0