Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2046 | ATGGCTAGATTTGAAGATCACAACAACAACAACAGTTGTAACAGTGGCCTTTCTTCTACTCCCATGATGATGATGATGATCAATTCTAATTCTCAAATGTTGGATCAAAACAACAACGACAACGACAACAACATCAACAATAACAAGATGTTTTTGCCTTTGTCTTGGTCTAATTCTTCTACCAACAATGTTTCAAGGGTTTCTCCTTTTGTTCCTCAACCTATCAACAACTCCTGCCGTGCTCAAATTATGGCTCATCCTCTTTTTCCTCGCCTCTTGGCCTCCTTTGCTAACTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGCGCGGTGGCCGCCGGAAGCTGTAGGACGGCGGCGCGTGGGGATGACGACCCAGCTTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAGCCTTTTAAAGAAGCAATGCTTTTTTGCTCAAGAATTGAGTCTCAGCTCAAAGCCGTAGCAGTTTCTTCTTCTACTTCTGCTGGTTGTGAGCTGGTTGGGCAGAACGAGTGTTCGAAGGAGATCGAGGTCGATATGAACGAAAACTATATCGATCCTCAAGCTGAAGAGAAGGAACTTAAAGGCCAGCTTCTGCGAAAATACAGTGGATACCTCGGCAGCCTAAAGCAAGAGTTTCTAAAGAAGAAGAAGAATGGAAAGTTACCGAAAGAAGCTCGACAACAGCTGCTCGACTGGTGGAGCCGACACTACAAATGGCCATACCCTTCGGAGTCTCAAAAGACGGCATTGGCTGAGTCGACAGGGCTCGATTTGAAGCAGATCAACAACTGGTTCATCAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGACAATGTCATTTGCAATCCTTTCTCTATGGAGTGTTCTTCCACTCTTTTCTGA | 996 | 46.08 | MARFEDHNNNNSCNSGLSSTPMMMMMINSNSQMLDQNNNDNDNNINNNKMFLPLSWSNSSTNNVSRVSPFVPQPINNSCRAQIMAHPLFPRLLASFANCQKVGAPPEVVARLEQACAVAAGSCRTAARGDDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFCSRIESQLKAVAVSSSTSAGCELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKTALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMECSSTLF | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33703826 | 33709732 | - | Sed0010436.1 | Sed05g2046 | 714672 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2046 | 331 | SMART | KNOX2_2 | 125 | 176 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed05g2046 | 331 | FunFam | Homeobox protein knotted-1-like 2 | 238 | 300 | - | - | |
Sed05g2046 | 331 | ProSiteProfiles | 'Homeobox' domain profile. | 233 | 296 | IPR001356 | GO:0003677(InterPro) | |
Sed05g2046 | 331 | CDD | homeodomain | 245 | 297 | IPR001356 | GO:0003677(InterPro) | |
Sed05g2046 | 331 | ProSitePatterns | 'Homeobox' domain signature. | 271 | 294 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed05g2046 | 331 | Pfam | Homeobox KN domain | 253 | 292 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed05g2046 | 331 | Gene3D | - | 238 | 300 | - | - | |
Sed05g2046 | 331 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 77 | 303 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed05g2046 | 331 | SMART | HOX_1 | 235 | 300 | IPR001356 | GO:0003677(InterPro) | |
Sed05g2046 | 331 | Pfam | KNOX1 domain | 80 | 117 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed05g2046 | 331 | SMART | ELK_2 | 213 | 234 | IPR005539 | GO:0003677(InterPro) | |
Sed05g2046 | 331 | Pfam | KNOX2 domain | 131 | 173 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed05g2046 | 331 | Pfam | ELK domain | 213 | 234 | IPR005539 | GO:0003677(InterPro) | |
Sed05g2046 | 331 | ProSiteProfiles | ELK domain profile. | 213 | 233 | IPR005539 | GO:0003677(InterPro) | |
Sed05g2046 | 331 | SUPERFAMILY | Homeodomain-like | 235 | 310 | IPR009057 | - | |
Sed05g2046 | 331 | SMART | KNOX1_2 | 77 | 121 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2046 | Sed-Chr5:33703826 | Sed10g0582 | Sed-Chr10:3858229 | 1.20E-99 | dispersed | |
Sed14g1325 | Sed-Chr14:22133290 | Sed05g2046 | Sed-Chr5:33703826 | 7.80E-102 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38578 | PF03791 | KNOX2 | 8.00E-22 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2046 | - | - | - | 0.0 |