Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2060 ATGTCTGAAGAACAAGCAATTTCAAATGCTTTCATTTGCAGCATTCCAACACTTGGATCTAACAACCCTCTTGTTGTTAAGAAGAAGAGGAATCTCCCTGGAAATCCAGATCCCGAAGCGGAAGTCGTGGCGTTGTCACCGAAGACCCTAATGGCAACGAACCGATTCTTATGCGAGGTATGCAGGAAGGGTTTTCAGAGGGATCAAAACCTACAACTTCATAGGAGAGGACACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGATGGCAACAAAGAGCCAAAGAAGAGAGTTTATGTTTGTCCAGAGAGAAGTTGTGTCCACCACCATCCTTCAAGGGCTCTTGGAGATCTCACAGGGATTAAAAAACACTTTTGTAGAAAACATGGTGAGAAGAAATGGAAATGTGAGAAATGTTCAAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACATTCAAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGACAGCTATGTAACTCACAGAGCATATTGTATGGCATTAGCAGAAGAAACAGCAAGACTAAATGCAACATCAACCTTAAACAACAACAACAACTCAATCACAACCACAACCACAAATGATCATATCAACATCATCAACAACAATCACCATTTCCTAAACCCCACATTAATCAATCCCCATCAATTACACCTCCCCTCCTCAAATTACTTTTTCAAACCAAATCATCAAAATTCCCAAATGTTCCTAAACAACAACCTTAATTATCTCAATCCCACATTAGGCCTCCCCTTTTGGATCCCAAATCCCCACCAAAACCTCGACAACAACGACGACAACAATTTCCATCACCCATTTGTTTTTTCAGTTCCTTCATTGTACAGCCATGAAGAACCAGCCCATCAAGCTATGACATCATCATCATCAGCCAACATGTCAGCCACAGTTTTGCTACAAAAGGCTGCACAAATTGGAGTGACAATCTCCACAAAAACAGACCCATCATCATCATTGATGACTAGTTTTGGCTTGAATTTCAGTGCCACAATGAACTCAAACTCCATTAATCAAGACTCTGCTGCTAGTAATTTGGTCCAAATTATGTACCCTGCTGCAAAGAGAATCAAGCACACTGTCAGTGAAGAAAGTGTCAGTGGTGGAGAAATATTAGGAGAGACAAGGGATTTCTTGGGTGTGGGTGTGCCTATCATATGTCATCCAGATCAGCAGTCAATGGATGGCTCTGATTTCATCTGA 1272 41.19 MSEEQAISNAFICSIPTLGSNNPLVVKKKRNLPGNPDPEAEVVALSPKTLMATNRFLCEVCRKGFQRDQNLQLHRRGHNLPWKLKQRSNDGNKEPKKRVYVCPERSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCMALAEETARLNATSTLNNNNNSITTTTTNDHINIINNNHHFLNPTLINPHQLHLPSSNYFFKPNHQNSQMFLNNNLNYLNPTLGLPFWIPNPHQNLDNNDDNNFHHPFVFSVPSLYSHEEPAHQAMTSSSSANMSATVLLQKAAQIGVTISTKTDPSSSLMTSFGLNFSATMNSNSINQDSAASNLVQIMYPAAKRIKHTVSEESVSGGEILGETRDFLGVGVPIICHPDQQSMDGSDFI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33849322 33852825 + Sed0007050.1 Sed05g2060 714686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2060 423 SUPERFAMILY beta-beta-alpha zinc fingers 55 155 IPR036236 -
Sed05g2060 423 FunFam protein indeterminate-domain 12-like 35 106 - -
Sed05g2060 423 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 200 - -
Sed05g2060 423 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Sed05g2060 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Sed05g2060 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 406 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed05g2060 423 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
Sed05g2060 423 Gene3D Classic Zinc Finger 54 156 - -
Sed05g2060 423 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Sed05g2060 423 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3259 Sed-Chr4:43076231 Sed05g2060 Sed-Chr5:33849322 1.90E-125 dispersed
Sed05g2060 Sed-Chr5:33849322 Sed06g0083 Sed-Chr6:477339 2.10E-88 dispersed
Sed04g3258 Sed-Chr4:43076231 Sed05g2060 Sed-Chr5:33849322 3.30E-150 wgd
Sed05g0941 Sed-Chr5:7602091 Sed05g2060 Sed-Chr5:33849322 5.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38581 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2060 K25870 - csv:101207997 493.426