Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2081 ATGGTTTCTTCAGGGGACCAAACAGAGAATAAAGTTGATCCTGATAGATTGGAGCATGAACAAAGCTCAGATAGCAAATCACAAGCCTCTCAGGAGGATGCTGGTGGAGGTAATGTATCAAACTCAGATAAAAAATGCACTGCAGCTGCCAAGAAGACACTTGAAGAAGCTTTCGAGCAGCCCGTCGTTACAATTGAACAAGTGGATCGAGGAGGCATTTCTACTATAGTGTCTGAGCAAGTGACCCATAACCCAATTCATGCGGAACAGGACTCGCATCCCGATTTGAAAGTAAGTATCACCTCTACAATACGAGTGAAAGCGACAGAGGATGGATATAACTGGCGAAAATATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGTACTCATGATGGAAAAATTACAGATACTGTTTACTTCGGCCAGCATCATCACCCTCAACCTCAACCTCTCATTCCAGTTGCTGTTGGAGTTCTTACCATGGTTGAAGAAAAATCAGATGAAGAACATGCTTCTAGAAGTTCTCAAGATAAGACTTCCATTGCGCTTGACCAAACACCTCATAAAACTGAGCCGGCTGATACGCTTCAACTGTCATCAGTCATGGCCAGTGAGAATGTAAAAGATGAAGCTTTGAAAAGATCTCGGATTAATGGCGATGCCAACATTGATGATACGCCGGACTTGAAACGAGAGAAGAAAAGCTGTAATAATGACGTGACAGTAGCAGACAAGTCAACGGTTGAATCACGTGTTGTTGTTCAAACTCCTAGTGAGGTTGACATTGTTAACGATGGATATCGCTGGCGGAAGTACGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGAGCGTCTCAGGATCCAAAATTGGTGCTTACCACGTACGAAGGTCATCACGACCATGATATGCCTCCTGCAAGGACTGTGACGTTGAACCCAGTTGGCTCCGCAGCAGCCCATACTGATGACTTAAAAACACAATCAGTCGGCAGTTCCATTGGCCATGATACAGTGGTTCAATCTAGTTCTGAAGGCACATTAATCGAAAAGAATGGCAAGTCGAACGCCACAGAAGCAAGTGATGGCGTCGTGCTCGATATGGTGGTTTTCCAGCCCAGGAGTTGCGAGTTGACAAAATTAGCAGCTGAAAGTAGCAATTGA 1278 43.97 MVSSGDQTENKVDPDRLEHEQSSDSKSQASQEDAGGGNVSNSDKKCTAAAKKTLEEAFEQPVVTIEQVDRGGISTIVSEQVTHNPIHAEQDSHPDLKVSITSTIRVKATEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHHHPQPQPLIPVAVGVLTMVEEKSDEEHASRSSQDKTSIALDQTPHKTEPADTLQLSSVMASENVKDEALKRSRINGDANIDDTPDLKREKKSCNNDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASQDPKLVLTTYEGHHDHDMPPARTVTLNPVGSAAAHTDDLKTQSVGSSIGHDTVVQSSSEGTLIEKNGKSNATEASDGVVLDMVVFQPRSCELTKLAAESSN 425
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 34023745 34028116 + Sed0006560.1 Sed05g2081 714707
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2081 425 FunFam WRKY transcription factor 57 269 343 - -
Sed05g2081 425 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 192 351 IPR044810 GO:0003700(InterPro)
Sed05g2081 425 Gene3D WRKY domain 270 336 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2081 425 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2081 425 SMART WRKY_cls 283 342 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2081 425 SMART WRKY_cls 109 167 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2081 425 SUPERFAMILY WRKY DNA-binding domain 275 343 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2081 425 FunFam WRKY transcription factor 98 169 - -
Sed05g2081 425 MobiDBLite consensus disorder prediction 366 394 - -
Sed05g2081 425 Gene3D WRKY domain 95 169 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2081 425 Pfam WRKY DNA -binding domain 110 166 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2081 425 Pfam WRKY DNA -binding domain 284 341 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2081 425 SUPERFAMILY WRKY DNA-binding domain 103 168 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2081 425 MobiDBLite consensus disorder prediction 1 45 - -
Sed05g2081 425 ProSiteProfiles WRKY domain profile. 278 343 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2081 425 MobiDBLite consensus disorder prediction 9 26 - -
Sed05g2081 425 MobiDBLite consensus disorder prediction 27 45 - -
Sed05g2081 425 MobiDBLite consensus disorder prediction 184 213 - -
Sed05g2081 425 MobiDBLite consensus disorder prediction 196 213 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2081 Sed-Chr5:34023745 Sed06g0971 Sed-Chr6:13206509 1.00E-58 dispersed
Sed14g0865 Sed-Chr14:17452343 Sed05g2081 Sed-Chr5:34023745 3.40E-18 dispersed
Sed05g2081 Sed-Chr5:34023745 Sed05g2082 Sed-Chr5:34023745 3.70E-242 tandem
Sed04g3719 Sed-Chr4:46005885 Sed05g2081 Sed-Chr5:34023745 3.10E-180 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38582 PF03106 WRKY 3.40E-26 CL0274 Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2081 K18834 - csv:101212482 572.392