Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g2081 | ATGGTTTCTTCAGGGGACCAAACAGAGAATAAAGTTGATCCTGATAGATTGGAGCATGAACAAAGCTCAGATAGCAAATCACAAGCCTCTCAGGAGGATGCTGGTGGAGGTAATGTATCAAACTCAGATAAAAAATGCACTGCAGCTGCCAAGAAGACACTTGAAGAAGCTTTCGAGCAGCCCGTCGTTACAATTGAACAAGTGGATCGAGGAGGCATTTCTACTATAGTGTCTGAGCAAGTGACCCATAACCCAATTCATGCGGAACAGGACTCGCATCCCGATTTGAAAGTAAGTATCACCTCTACAATACGAGTGAAAGCGACAGAGGATGGATATAACTGGCGAAAATATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGTACTCATGATGGAAAAATTACAGATACTGTTTACTTCGGCCAGCATCATCACCCTCAACCTCAACCTCTCATTCCAGTTGCTGTTGGAGTTCTTACCATGGTTGAAGAAAAATCAGATGAAGAACATGCTTCTAGAAGTTCTCAAGATAAGACTTCCATTGCGCTTGACCAAACACCTCATAAAACTGAGCCGGCTGATACGCTTCAACTGTCATCAGTCATGGCCAGTGAGAATGTAAAAGATGAAGCTTTGAAAAGATCTCGGATTAATGGCGATGCCAACATTGATGATACGCCGGACTTGAAACGAGAGAAGAAAAGCTGTAATAATGACGTGACAGTAGCAGACAAGTCAACGGTTGAATCACGTGTTGTTGTTCAAACTCCTAGTGAGGTTGACATTGTTAACGATGGATATCGCTGGCGGAAGTACGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGAGCGTCTCAGGATCCAAAATTGGTGCTTACCACGTACGAAGGTCATCACGACCATGATATGCCTCCTGCAAGGACTGTGACGTTGAACCCAGTTGGCTCCGCAGCAGCCCATACTGATGACTTAAAAACACAATCAGTCGGCAGTTCCATTGGCCATGATACAGTGGTTCAATCTAGTTCTGAAGGCACATTAATCGAAAAGAATGGCAAGTCGAACGCCACAGAAGCAAGTGATGGCGTCGTGCTCGATATGGTGGTTTTCCAGCCCAGGAGTTGCGAGTTGACAAAATTAGCAGCTGAAAGTAGCAATTGA | 1278 | 43.97 | MVSSGDQTENKVDPDRLEHEQSSDSKSQASQEDAGGGNVSNSDKKCTAAAKKTLEEAFEQPVVTIEQVDRGGISTIVSEQVTHNPIHAEQDSHPDLKVSITSTIRVKATEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHHHPQPQPLIPVAVGVLTMVEEKSDEEHASRSSQDKTSIALDQTPHKTEPADTLQLSSVMASENVKDEALKRSRINGDANIDDTPDLKREKKSCNNDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASQDPKLVLTTYEGHHDHDMPPARTVTLNPVGSAAAHTDDLKTQSVGSSIGHDTVVQSSSEGTLIEKNGKSNATEASDGVVLDMVVFQPRSCELTKLAAESSN | 425 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 34023745 | 34028116 | + | Sed0006560.1 | Sed05g2081 | 714707 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g2081 | 425 | FunFam | WRKY transcription factor 57 | 269 | 343 | - | - | |
| Sed05g2081 | 425 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 192 | 351 | IPR044810 | GO:0003700(InterPro) | |
| Sed05g2081 | 425 | Gene3D | WRKY domain | 270 | 336 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed05g2081 | 425 | ProSiteProfiles | WRKY domain profile. | 104 | 168 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed05g2081 | 425 | SMART | WRKY_cls | 283 | 342 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed05g2081 | 425 | SMART | WRKY_cls | 109 | 167 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed05g2081 | 425 | SUPERFAMILY | WRKY DNA-binding domain | 275 | 343 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed05g2081 | 425 | FunFam | WRKY transcription factor | 98 | 169 | - | - | |
| Sed05g2081 | 425 | MobiDBLite | consensus disorder prediction | 366 | 394 | - | - | |
| Sed05g2081 | 425 | Gene3D | WRKY domain | 95 | 169 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed05g2081 | 425 | Pfam | WRKY DNA -binding domain | 110 | 166 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed05g2081 | 425 | Pfam | WRKY DNA -binding domain | 284 | 341 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed05g2081 | 425 | SUPERFAMILY | WRKY DNA-binding domain | 103 | 168 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed05g2081 | 425 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Sed05g2081 | 425 | ProSiteProfiles | WRKY domain profile. | 278 | 343 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Sed05g2081 | 425 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
| Sed05g2081 | 425 | MobiDBLite | consensus disorder prediction | 27 | 45 | - | - | |
| Sed05g2081 | 425 | MobiDBLite | consensus disorder prediction | 184 | 213 | - | - | |
| Sed05g2081 | 425 | MobiDBLite | consensus disorder prediction | 196 | 213 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g2081 | Sed-Chr5:34023745 | Sed06g0971 | Sed-Chr6:13206509 | 1.00E-58 | dispersed | |
| Sed14g0865 | Sed-Chr14:17452343 | Sed05g2081 | Sed-Chr5:34023745 | 3.40E-18 | dispersed | |
| Sed05g2081 | Sed-Chr5:34023745 | Sed05g2082 | Sed-Chr5:34023745 | 3.70E-242 | tandem | |
| Sed04g3719 | Sed-Chr4:46005885 | Sed05g2081 | Sed-Chr5:34023745 | 3.10E-180 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 38582 | PF03106 | WRKY | 3.40E-26 | CL0274 | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g2081 | K18834 | - | csv:101212482 | 572.392 |