Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2082 ATGGTTTCTTCAGGGGACCAAACAGAGAATAAAGTTGATCCTGATAGATTGGAGCATGAACAAAGCTCAGATAGCAAATCACAAGCCTCTCAGGAGGATGCTGGTGGAGGTAATGTATCAAACTCAGATAAAAAATGCACTGCAGCTGCCAAGAAGACACTTGAAGAAGCTTTCGAGCAGCCCGTCGTTACAATTGAACAAGTGGATCGAGGAGGCATTTCTACTATAGTGTCTGAGCAAGTGACCCATAACCCAATTCATGCGGAACAGGACTCGCATCCCGATTTGAAAGTAAGTATCACCTCTACAATACGAGTGAAAGCGACAGAGGATGGATATAACTGGCGAAAATATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGTACTCATGATGGAAAAATTACAGATACTGTTTACTTCGGCCAGCATCATCACCCTCAACCTCAACCTCTCATTCCAGTTGCTGTTGGAGTTCTTACCATGGTTGAAGAAAAATCAGATGAAGAACATGCTTCTAGAAGTTCTCAAGATAAGACTTCCATTGCGCTTGACCAAACACCTCATAAAACTGAGCCGGCTGATACGCTTCAACTGTCATCAGTCATGGCCAGTGAGAATGTAAAAGATGAAGCTTTGAAAAGATCTCGGATTAATGGCGATGCCAACATTGATGATACGCCGGACTTGAAACGAGATTTCAAAAGGAAGAAAAGCTGTAATAATGACGTGACAGTAGCAGACAAGTCAACGGTTGAATCACGTGTTGTTGTTCAAACTCCTAGTGAGGTTGACATTGTTAACGATGGATATCGCTGGCGGAAGTACGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGAGCGTCTCAGGATCCAAAATTGGTGCTTACCACGTACGAAGGTCATCACGACCATGATATGCCTCCTGCAAGGACTGTGACGTTGAACCCAGTTGGCTCCGCAGCAGCCCATACTGATGACTTAAAAACACAATCAGTCGGCAGTTCCATTGGCCATGATACAGTGGTTCAATCTAGTTCTGAAGGCACATTAATCGAAAAGAATGGCAAGTCGAACGCCACAGAAGCAAGTGATGGCGTCGTGCTCGATATGGTGGTTTTCCAGCCCAGGAGTTGCGAGTTGACAAAATTAGCAGCTGAAAGTAGCAATTGA 1287 43.82 MVSSGDQTENKVDPDRLEHEQSSDSKSQASQEDAGGGNVSNSDKKCTAAAKKTLEEAFEQPVVTIEQVDRGGISTIVSEQVTHNPIHAEQDSHPDLKVSITSTIRVKATEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHHHPQPQPLIPVAVGVLTMVEEKSDEEHASRSSQDKTSIALDQTPHKTEPADTLQLSSVMASENVKDEALKRSRINGDANIDDTPDLKRDFKRKKSCNNDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASQDPKLVLTTYEGHHDHDMPPARTVTLNPVGSAAAHTDDLKTQSVGSSIGHDTVVQSSSEGTLIEKNGKSNATEASDGVVLDMVVFQPRSCELTKLAAESSN 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34023745 34028116 + Sed0006560.2 Sed05g2082 714708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2082 428 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 192 354 IPR044810 GO:0003700(InterPro)
Sed05g2082 428 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2082 428 ProSiteProfiles WRKY domain profile. 281 346 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2082 428 MobiDBLite consensus disorder prediction 369 396 - -
Sed05g2082 428 FunFam WRKY transcription factor 98 169 - -
Sed05g2082 428 SMART WRKY_cls 286 345 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2082 428 SMART WRKY_cls 109 167 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2082 428 Pfam WRKY DNA -binding domain 287 344 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2082 428 Pfam WRKY DNA -binding domain 110 166 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2082 428 Gene3D WRKY domain 273 339 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2082 428 SUPERFAMILY WRKY DNA-binding domain 103 168 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2082 428 MobiDBLite consensus disorder prediction 1 45 - -
Sed05g2082 428 MobiDBLite consensus disorder prediction 9 26 - -
Sed05g2082 428 MobiDBLite consensus disorder prediction 27 45 - -
Sed05g2082 428 SUPERFAMILY WRKY DNA-binding domain 278 346 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2082 428 MobiDBLite consensus disorder prediction 184 213 - -
Sed05g2082 428 MobiDBLite consensus disorder prediction 196 213 - -
Sed05g2082 428 Gene3D WRKY domain 95 169 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g2082 428 FunFam WRKY transcription factor 57 272 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3719 Sed-Chr4:46005885 Sed05g2082 Sed-Chr5:34023745 2.90E-178 dispersed
Sed05g2082 Sed-Chr5:34023745 Sed06g0971 Sed-Chr6:13206509 2.10E-59 dispersed
Sed05g2081 Sed-Chr5:34023745 Sed05g2082 Sed-Chr5:34023745 3.70E-242 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38583 PF03106 WRKY 3.40E-26 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2082 K18834 - csv:101212482 565.844