Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2082 | ATGGTTTCTTCAGGGGACCAAACAGAGAATAAAGTTGATCCTGATAGATTGGAGCATGAACAAAGCTCAGATAGCAAATCACAAGCCTCTCAGGAGGATGCTGGTGGAGGTAATGTATCAAACTCAGATAAAAAATGCACTGCAGCTGCCAAGAAGACACTTGAAGAAGCTTTCGAGCAGCCCGTCGTTACAATTGAACAAGTGGATCGAGGAGGCATTTCTACTATAGTGTCTGAGCAAGTGACCCATAACCCAATTCATGCGGAACAGGACTCGCATCCCGATTTGAAAGTAAGTATCACCTCTACAATACGAGTGAAAGCGACAGAGGATGGATATAACTGGCGAAAATATGGTCAGAAACTAGTAAAAGGAAATGTCTTTGTTAGAAGCTATTACAGATGCACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGTACTCATGATGGAAAAATTACAGATACTGTTTACTTCGGCCAGCATCATCACCCTCAACCTCAACCTCTCATTCCAGTTGCTGTTGGAGTTCTTACCATGGTTGAAGAAAAATCAGATGAAGAACATGCTTCTAGAAGTTCTCAAGATAAGACTTCCATTGCGCTTGACCAAACACCTCATAAAACTGAGCCGGCTGATACGCTTCAACTGTCATCAGTCATGGCCAGTGAGAATGTAAAAGATGAAGCTTTGAAAAGATCTCGGATTAATGGCGATGCCAACATTGATGATACGCCGGACTTGAAACGAGATTTCAAAAGGAAGAAAAGCTGTAATAATGACGTGACAGTAGCAGACAAGTCAACGGTTGAATCACGTGTTGTTGTTCAAACTCCTAGTGAGGTTGACATTGTTAACGATGGATATCGCTGGCGGAAGTACGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGAGCGTCTCAGGATCCAAAATTGGTGCTTACCACGTACGAAGGTCATCACGACCATGATATGCCTCCTGCAAGGACTGTGACGTTGAACCCAGTTGGCTCCGCAGCAGCCCATACTGATGACTTAAAAACACAATCAGTCGGCAGTTCCATTGGCCATGATACAGTGGTTCAATCTAGTTCTGAAGGCACATTAATCGAAAAGAATGGCAAGTCGAACGCCACAGAAGCAAGTGATGGCGTCGTGCTCGATATGGTGGTTTTCCAGCCCAGGAGTTGCGAGTTGACAAAATTAGCAGCTGAAAGTAGCAATTGA | 1287 | 43.82 | MVSSGDQTENKVDPDRLEHEQSSDSKSQASQEDAGGGNVSNSDKKCTAAAKKTLEEAFEQPVVTIEQVDRGGISTIVSEQVTHNPIHAEQDSHPDLKVSITSTIRVKATEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHHHPQPQPLIPVAVGVLTMVEEKSDEEHASRSSQDKTSIALDQTPHKTEPADTLQLSSVMASENVKDEALKRSRINGDANIDDTPDLKRDFKRKKSCNNDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASQDPKLVLTTYEGHHDHDMPPARTVTLNPVGSAAAHTDDLKTQSVGSSIGHDTVVQSSSEGTLIEKNGKSNATEASDGVVLDMVVFQPRSCELTKLAAESSN | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34023745 | 34028116 | + | Sed0006560.2 | Sed05g2082 | 714708 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2082 | 428 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 192 | 354 | IPR044810 | GO:0003700(InterPro) | |
Sed05g2082 | 428 | ProSiteProfiles | WRKY domain profile. | 104 | 168 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g2082 | 428 | ProSiteProfiles | WRKY domain profile. | 281 | 346 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g2082 | 428 | MobiDBLite | consensus disorder prediction | 369 | 396 | - | - | |
Sed05g2082 | 428 | FunFam | WRKY transcription factor | 98 | 169 | - | - | |
Sed05g2082 | 428 | SMART | WRKY_cls | 286 | 345 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g2082 | 428 | SMART | WRKY_cls | 109 | 167 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g2082 | 428 | Pfam | WRKY DNA -binding domain | 287 | 344 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g2082 | 428 | Pfam | WRKY DNA -binding domain | 110 | 166 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g2082 | 428 | Gene3D | WRKY domain | 273 | 339 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g2082 | 428 | SUPERFAMILY | WRKY DNA-binding domain | 103 | 168 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g2082 | 428 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Sed05g2082 | 428 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
Sed05g2082 | 428 | MobiDBLite | consensus disorder prediction | 27 | 45 | - | - | |
Sed05g2082 | 428 | SUPERFAMILY | WRKY DNA-binding domain | 278 | 346 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g2082 | 428 | MobiDBLite | consensus disorder prediction | 184 | 213 | - | - | |
Sed05g2082 | 428 | MobiDBLite | consensus disorder prediction | 196 | 213 | - | - | |
Sed05g2082 | 428 | Gene3D | WRKY domain | 95 | 169 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g2082 | 428 | FunFam | WRKY transcription factor 57 | 272 | 346 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3719 | Sed-Chr4:46005885 | Sed05g2082 | Sed-Chr5:34023745 | 2.90E-178 | dispersed | |
Sed05g2082 | Sed-Chr5:34023745 | Sed06g0971 | Sed-Chr6:13206509 | 2.10E-59 | dispersed | |
Sed05g2081 | Sed-Chr5:34023745 | Sed05g2082 | Sed-Chr5:34023745 | 3.70E-242 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38583 | PF03106 | WRKY | 3.40E-26 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2082 | K18834 | - | csv:101212482 | 565.844 |