Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2083 ATGTCTCTGAATTCCAAGTTCTCTTGTTCTAAGGTTCGATTGCCTGCTGGTTTGAAGGCCAAGAGGGCTGAGGAGCATTTTCATGGCCAATGGTGGAGTAACCTTCTTTATGTCTTGCCATTTGGCTTAGTTTTGATTGTGGGTCTTTGGTTTATATTTAGTCTTTGTGATGGAAATTCTGTTCGAGAAGTGGAGATTCCAGATATGTGTAAAGAGAAGGCTTGGAACTTGCTGAAGCATTCCAACGTTAGTGAGTGTCAGTTTCATGCTTTGGCTTCATTCTTCTTTCATTCAGATAAGACAGCATCTCTCCAGTGTGCTAAAGACCCAGGGCCTGGCATTGCGCTGAACGATTGCATTTCTTGCGCTCTGAAGATATTAGAAGAACAAGACTGGCAAGAGAAGCAGCATGAGTGGCTTTCCAAAAATTTACAATCTGAATGCCAGTGCCCAATTAGGGGTGAGACAGGCTCCTTCACTAATGACCTATTGCAGTTAGTGGACCAGATCTTGCATGCTACGGAAATTGGAAATGAGCATTCTCGAAGTTTGAATAGATTAGTAATGGCATGCTTATGGATCCTTGTTGTAGTGATATCGTACCTGAAGATGTCTAGTTCGCGTTTGAAATTAAGGAACCATAAACACAAGCCAATAAAGCATCCATCGGTTGAGAATCCGCCAGGGATTCAACTGCAGCAGGTGTTACTACAAAAGCAGTTAGATCTACCTCCAAGTTCTCCTAAAGGTGCTGGAAAATGGAGGAAAAAGCTTCTTATAATATTTGTTTTACTTGGAATTGTTGGATCCTTTTGGCTATTTTGGTATTTAAACAACAAGATCATCTTGAGGAGAGAAGAAACACTTGCTAATATGTGCGATGAGCGAGCTCGAATGCTACAGGATCAGTTCAACGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTGGTCTCCACTTTCCATCATGACAAGCATCCATCTGCCATTGATCAGAAAACATTCAGCGAATATGCAGAAAGAACAGCTTTTGAGCGACCTCTAACCAGTGGAGTGGCTTATGCTTTGAAAGTAAATCATTCAGAAAGAAAACAATTTGAAGAGGAACATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACTCTGGTCCATGATTGTATTCCTGAGAATTTAGACCCTGCTCCCTTTCAGGATGAATATGCACCTGTGATATTTTCACAAGAAACTGTATCACATATAGTTTCCATTGATATGATGTCTGGAAAGGAGGACCGTGAAAACATCTTGCGAGCGAGGGCTACTGGGAAGGGAGTGCTGACATCTCCTTTCAAGCTTCTTAAGTCCAATCACCTTGGTGTTGTACTCACTTTTGCTGTCTATAACACGGACCTTCCTCCTAATGCAACACAAGAGCAACGCACTGAAGCTACTGTTGGGTATCTAGGAGCATCCTATGATGTTCCATCACTGGTGGACAAACTTCTGCACCAACTTTCCAGCAAACAATCAATTGTTGTTGATGTTTATGATACAACTAATGCATCTGCTCACATCAAGATGTATGGATCTGATGTGATTGATACTGGTCTATTGCACGTTAGCAACCTGGATTTTGGAGACCCCCAACGGAAGCATGAGATGCATTGCAGATTTAAGCAGAAGCCTCAATTACCATGGATGGCTATAAATTCATCGGTGGGAGTTCTAGTTATTACTTTACTCGTCGGTCATATATTTTATGCGGCCATAAATCGAATCGCGAAAGTGGAGAATGACTATTGTGAGATGATGGGACTCAAAACACGTGCTGAAGCTGCAGATGTTGCAAAGTCTCAATTTCTTGCAACTGTTTCCCATGAGATCAGGACACCAATGAATGGCGTTTTAGGGATGCTGAAAATGCTGATGCACACTGATCTTGACCCAAACCAACAGGACTATGCTCAAACTGCATATGATAGTGGGAGAGAATTAATATCATTAATAAATGAGGTTCTCGACCACGCTAAAATAGAATCAGGCAGGCTAGAACTTGAAGATGTACCATTCGATCCACGAGCTTTACTGGATAATGCTTTGTCAATGTTCTCTGGAAAATGTCATGAGAAGGGTATAGAGTTAGCTGTTTATGTCTCTAATCTGGTCCCTGAAATTCTCATTGGTGACCCTGGGCGCTTTCGACAGATAATTACAAATCTTGTGGGAAATTCAATTAAGTTCACCAATGACAAAGGACACATATTTGTTACTGTACACCTGGCAGACGAAGTGAGGATTCCACCTGATGCAATGGACAATGTGCTTAGACAAGGCTTAGATTTAGTAAAAGAGATGCCGGGAAAATGCCATAATACACTAAGTGGGTTTCCAGTGGTCGAAAGGCACCAGAGTTGGGAGTGTTTCGAGATATTTAGTAGGACAGATGCAATGAAGGAAGATGACTTAACTAAATTGCTTGTATCAGTCGAGGACACAGGTCATGGAATTCCTTTAGAAGCGCAAAGTCGAATTTTCATGCCTTTTATGCAAGCTGATAGCTCCACTTCGCGCAAGTATGGTGGAACTGGAATAGGTCTGAGCATCAGCAAACGTCTGGTGGATCTAATGGGTGGAGAGATAGGTTTTGTGAGCCAACCTGGTGTTGGCAGCACATTTTCATTCACTGGATGTTTGAGAAAAGGCAATACAAGGTCTCTCAATCTGAAGTGGCAGCAGAATGATCCAACTGTATTTGATTTTCGAGGACTTCGAGCATTGGTAATAGATAATAGAAGCATTAGAGCTGAGGTAACAAAATATCATCTCAAGAGGTTAGGGATCTCAGTAGATATAGTTTCAAGTCTGGTTGCAGCACGTGAATACTTAACCAATAATTGCATCAAAAGTCCATCCAAGCCTTTGGCCATGGTGCTTATTGACAAAGATGTATGGGATAAGGAAACCGGTCCGACGATCTCTCGTGCAATTAAAGAACATGGTGCAAATGGCAAAGAAGATTCAACACCAAGTCCTAAGGTTTTTCTCTTGGCGACCTCCGACCTTCAAGAAACACGAGCTTTGAAGTTGACCGGTTATGTTAACAATGTAATGACAAAACCCCTTAGGTTGGGTGTCTTGATTGGATGCTTCCAGGAAGCCTTTGGGAAGGTAAATAGAAAGAAACCATCTATTCTGGGGAAGTTGCTTAGAGAAAAGCAAATACTGGTGGTTGATGACAATGCAGTTAATAGAAGAGTTGCAGAAGGTGCTCTAAAGAAATATGGAGCAAAGGTTACTTGTGTGGAAAGTGGCAGAGCTGCTATTTCATTGTTACATCCACCACACAAGTTTGATGCTTGCTTCATGGATCTTCAGATGCCTGAGATGGATGGGTTTGCAGCAACACGACATATACGAAATATCGAAAAGAAGGTTAAAGAGGACATTGCTTCTGGGAAAGCACCAATTGAGATGTTTGGGAATGTGGCTCATTGGCATACACCAGTATTGGCCTTGACAGCTGATGTAATTCAGGCTACAAATGAAGCATGCATGAGCTGCGGGATGGATGGCTATGTCGCAAAGCCTTTCGAAGAAGAAAAATTGTATTCAGCAGTAGCTCGTTTCTTCGAGTCCGGCAATGGAGTACCACATGAATAG 3645 42.14 MSLNSKFSCSKVRLPAGLKAKRAEEHFHGQWWSNLLYVLPFGLVLIVGLWFIFSLCDGNSVREVEIPDMCKEKAWNLLKHSNVSECQFHALASFFFHSDKTASLQCAKDPGPGIALNDCISCALKILEEQDWQEKQHEWLSKNLQSECQCPIRGETGSFTNDLLQLVDQILHATEIGNEHSRSLNRLVMACLWILVVVISYLKMSSSRLKLRNHKHKPIKHPSVENPPGIQLQQVLLQKQLDLPPSSPKGAGKWRKKLLIIFVLLGIVGSFWLFWYLNNKIILRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHDKHPSAIDQKTFSEYAERTAFERPLTSGVAYALKVNHSERKQFEEEHGWTIKKMGTEDQTLVHDCIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARATGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPNATQEQRTEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASAHIKMYGSDVIDTGLLHVSNLDFGDPQRKHEMHCRFKQKPQLPWMAINSSVGVLVITLLVGHIFYAAINRIAKVENDYCEMMGLKTRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMHTDLDPNQQDYAQTAYDSGRELISLINEVLDHAKIESGRLELEDVPFDPRALLDNALSMFSGKCHEKGIELAVYVSNLVPEILIGDPGRFRQIITNLVGNSIKFTNDKGHIFVTVHLADEVRIPPDAMDNVLRQGLDLVKEMPGKCHNTLSGFPVVERHQSWECFEIFSRTDAMKEDDLTKLLVSVEDTGHGIPLEAQSRIFMPFMQADSSTSRKYGGTGIGLSISKRLVDLMGGEIGFVSQPGVGSTFSFTGCLRKGNTRSLNLKWQQNDPTVFDFRGLRALVIDNRSIRAEVTKYHLKRLGISVDIVSSLVAAREYLTNNCIKSPSKPLAMVLIDKDVWDKETGPTISRAIKEHGANGKEDSTPSPKVFLLATSDLQETRALKLTGYVNNVMTKPLRLGVLIGCFQEAFGKVNRKKPSILGKLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGRAAISLLHPPHKFDACFMDLQMPEMDGFAATRHIRNIEKKVKEDIASGKAPIEMFGNVAHWHTPVLALTADVIQATNEACMSCGMDGYVAKPFEEEKLYSAVARFFESGNGVPHE 1214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34029170 34044073 - Sed0006248.1 Sed05g2083 714709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2083 1214 Gene3D - 582 674 - -
Sed05g2083 1214 SUPERFAMILY CheY-like 1065 1205 IPR011006 -
Sed05g2083 1214 SMART CHASE_2 326 525 IPR006189 -
Sed05g2083 1214 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 665 890 IPR036890 -
Sed05g2083 1214 Gene3D CHASE domain 330 557 IPR042240 -
Sed05g2083 1214 Pfam His Kinase A (phospho-acceptor) domain 611 676 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g2083 1214 SUPERFAMILY CheY-like 914 1050 IPR011006 -
Sed05g2083 1214 CDD REC_hyHK_CKI1_RcsC-like 1069 1201 - -
Sed05g2083 1214 Pfam CHASE domain 329 523 IPR006189 -
Sed05g2083 1214 SMART HKATPase_4 723 895 IPR003594 -
Sed05g2083 1214 FunFam Histidine kinase 4 330 557 - -
Sed05g2083 1214 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 818 890 IPR003594 -
Sed05g2083 1214 Gene3D - 675 895 IPR036890 -
Sed05g2083 1214 Gene3D - 277 329 - -
Sed05g2083 1214 Gene3D - 58 103 - -
Sed05g2083 1214 ProSiteProfiles Histidine kinase domain profile. 618 895 IPR005467 -
Sed05g2083 1214 Gene3D - 912 1054 - -
Sed05g2083 1214 Gene3D - 1062 1208 - -
Sed05g2083 1214 PRINTS Bacterial sensor protein C-terminal signature 820 834 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g2083 1214 PRINTS Bacterial sensor protein C-terminal signature 879 892 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g2083 1214 PRINTS Bacterial sensor protein C-terminal signature 855 873 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g2083 1214 PRINTS Bacterial sensor protein C-terminal signature 838 848 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed05g2083 1214 SMART REC_2 918 1045 IPR001789 GO:0000160(InterPro)
Sed05g2083 1214 SMART REC_2 1067 1201 IPR001789 GO:0000160(InterPro)
Sed05g2083 1214 ProSiteProfiles Response regulatory domain profile. 1068 1205 IPR001789 GO:0000160(InterPro)
Sed05g2083 1214 PANTHER TWO-COMPONENT HISTIDINE KINASE 252 1204 IPR050956 -
Sed05g2083 1214 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 599 677 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g2083 1214 CDD HATPase_EvgS-ArcB-TorS-like 728 893 - -
Sed05g2083 1214 CDD HisKA 611 672 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g2083 1214 FunFam Histidine kinase 4 583 674 - -
Sed05g2083 1214 ProSiteProfiles Response regulatory domain profile. 919 1049 IPR001789 GO:0000160(InterPro)
Sed05g2083 1214 ProSiteProfiles CHASE domain profile. 326 550 IPR006189 -
Sed05g2083 1214 Pfam Response regulator receiver domain 1069 1201 IPR001789 GO:0000160(InterPro)
Sed05g2083 1214 SMART HisKA_10 611 676 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0960 Sed-Chr4:11138346 Sed05g2083 Sed-Chr5:34029170 3.60E-40 dispersed
Sed04g0961 Sed-Chr4:11139303 Sed05g2083 Sed-Chr5:34029170 3.70E-40 dispersed
Sed05g2083 Sed-Chr5:34029170 Sed07g0081 Sed-Chr7:885634 2.80E-306 dispersed
Sed05g2083 Sed-Chr5:34029170 Sed05g2084 Sed-Chr5:34029170 0.00E+00 tandem
Sed03g1085 Sed-Chr3:6662777 Sed05g2083 Sed-Chr5:34029170 7.50E-270 transposed
Sed01g0554 Sed-Chr1:4148903 Sed05g2083 Sed-Chr5:34029170 0.00E+00 wgd
Sed05g0964 Sed-Chr5:7944764 Sed05g2083 Sed-Chr5:34029170 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38584 PF03924 CHASE 8.00E-36 CL0165 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2083 K14489 - vvi:100263145 1535.39