Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2091 ATGGCCACCTCTGGTATCCAACAATCTGCCTTCGCCGGCCAGACCGCCTTGAAGCCGTCCAATGAGCTCGTCCGAAAGGTCGGCGCTGTCGGTGGCGGCCGCTTCACCATGCGTCGGACTGTCAAGAGTGCTCCTCAAAGCATATGGTATGGCCCAGATCGCCCAAAATACTTGGGACCATTCTCAGAACAAACACCATCTTACCTGACTGGAGAGTTTGCTGGTGACTACGGATGGGATACAGCCGGTCTATCAGCAGATCCCGAGACTTTCGCAAAGAACCGTGAGCTCGAGGTGATCCACTCGAGATGGGCCATGCTTGGTGCACTAGGTTGCGTCTTCCCCGAGCTCCTGGCAAAGAACGGTGTCCAGTTTGGTGAATCGGTTTGGTTCAAGGCCGGTTCCCAAATCTTCTCGGAGGGAGGTCTCGATTACCTTGGCAACCCAAACCTCATCCATGCTCAGAGCATCCTAGCAATTTGGGCTTCCCAAGTTGTGCTGATGGGCTTTGTTGAAGGTTACAGAGTTGGTGGTGGTCCCCTTGGTGAAGGACTTGACCCTATTTACCCCGGGGGCGCCTTCGACCCACTCGGATTGGCAGATGACCCTGATGCATTTGCTGAGCTGAAGGTGAAGGAACTAAAGAATGGAAGGCTGGCGATGTTCTCCATGTTCGGATTCTTCGTCCAGGCTATCGTAACTGGGAAGGGACCTATCGAGAATCTCTTCGACCATGTTGCAGATCCAGTAGCCAACAATGCATGGGCGTACGCCACCAACTTCGTCCCCGGAAAGTGA 798 54.26 MATSGIQQSAFAGQTALKPSNELVRKVGAVGGGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVQFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34076276 34078068 - Sed0009902.1 Sed05g2091 714717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2091 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Sed05g2091 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed05g2091 265 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
Sed05g2091 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Sed05g2091 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2091 Sed-Chr5:34076276 Sed14g1562 Sed-Chr14:23798355 2.80E-118 dispersed
Sed07g1879 Sed-Chr7:30535291 Sed05g2091 Sed-Chr5:34076276 4.60E-36 transposed
Sed13g1162 Sed-Chr13:14698087 Sed05g2091 Sed-Chr5:34076276 8.90E-101 transposed
Sed04g3726 Sed-Chr4:46021408 Sed05g2091 Sed-Chr5:34076276 6.70E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2091 K08913 - csv:101212963 531.561